Phyre 2 alignment of P75804 with c2j04B

Job Description P75804
Confidence 99.21% Date Thu Jan 5 12:14:23 GMT 2012

Rank 90 Aligned Residues 254

% Identity 7% Template c2j04B_

PDB info PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic

Resolution 3.2 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.							.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																.
Query SS confidence																						.	.	.	.	.	.																.
Query Sequence	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	.	.	.	.	.	.	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	.	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R
Query Conservation																						.	.	.	.	.	.																.
Alig confidence																						.	.	.	.	.	.																.
Template Conservation
Template Sequence	V	Q	T	I	V	H	S	F	G	E	V	W	D	L	K	W	H	E	G	C	H	A	P	H	L	V	G	C	L	S	F	V	S	Q	E	G	T	I	N	F	L	E	I	I	D	N	A	T	D	V	H	V	F	K	M	C	E	K	P	S	L	T	L	S	L	A	D	S	L	I	T	T	F	D	F	L	S	P	T	T
Template Known Secondary structure										S								S	S				S	S	S	S								T	T	S											S	S	S	S	S							S		S						T	T	T								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	.	.	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D
Query Conservation																																																							.	.
Alig confidence	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.												.	.
Template Conservation	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Sequence	.	V	V	C	G	F	K	N	G	F	V	A	E	F	D	L	.	.	.	.	.	.	.	.	T	D	P	E	V	P	S	F	Y	D	.	.	.	.	.	.	.	.	.	Q	V	H	D	S	Y	I	L	S	V	S	T	A	Y	S	D	F	E	D	T	V	V	S	T	V	A	V	D	G	Y	F	Y	I	F	N	P	K
Template Known Secondary structure	.						T	T	S							T	.	.	.	.	.	.	.	.	T	B		S	S		S				.	.	.	.	.	.	.	.	.			S	S	S											T	T	S									T	T	S							G	G
Template Predicted Secondary structure	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450									.	.	.	.	.	.	.	.	.	460										.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.

	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence	D	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	K	T	T	V	S	R	F	R	G	S	N	L	V	P	V	V	Y	C	P	Q	I	Y	S	Y	I	Y	S	.	.	D	G	A	S	S	L	R	A	V	P	S	R	A	A	F	A	V	H	P	L	V	S	R	E
Template Known Secondary structure	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S			S								T	T	T	T						.	.		S	S	S							T	T		T	T									S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
	498	.	500																							.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.			530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.

	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																																						.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	T	I	T	A	I	G	V	S	R	L	H	P	M	V	L	A	G	S	A	D	G	S	L	I	I	T	N	A	A	R	R	L	L	H	G	I	Q	K	S	L	R	L	W	K	W	D	Y	S	I	K	D	D	K	Y	R	I	D	S	S	Y	E	V	Y	P	H	G	I	N	I	T	C	T	K	W	N	E	T	S	A
Template Known Secondary structure	S									S	S			B						T	T	T						B	S		S	S	T	T	T												B			S	S	S																	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
	554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.

	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D
Query Conservation
Alig confidence	.	.	.	.
Template Conservation	.	.	.	.
Template Sequence	.	.	.	.	G	G	K	C	Y	A	F	S	N	S	A	G	L	L	T	L	E	Y	L	S	L	E
Template Known Secondary structure	.	.	.	.	T	T	T							T	T	S								S
Template Predicted Secondary structure	.	.	.	.
Template SS confidence
					653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions