Phyre 2 alignment of P75804 with c1z68A

Job Description P75804
Confidence 97.98% Date Thu Jan 5 12:14:23 GMT 2012

Rank 145 Aligned Residues 250

% Identity 12% Template c1z68A_

PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G
Query Conservation
Alig confidence								.																																		.	.	.	.	.	.	.
Template Conservation								.																																		.	.	.	.	.	.	.
Template Sequence	N	W	I	S	G	Q	E	.	Y	L	H	Q	S	A	D	N	N	I	V	L	Y	N	I	E	T	G	Q	S	Y	T	I	L	S	N	R	T	M	K	S	V	N	.	.	.	.	.	.	.	A	S	N	Y	G	L	S	P	D	R	Q	F	V	Y	L	E	S	D	Y	S	K	L	W	R	Y	S	Y	T	A	T	Y	Y
Template Known Secondary structure			S	S	S	S		.						T	T	S							S	S	S														T	T	T	.	.	.	.	.	.	.		S						T	T	S	S												S	S	S
Template Predicted Secondary structure								.																																		.	.	.	.	.	.	.
Template SS confidence
	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.																												.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.																												.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	Y	D	L	S	N	G	E	F	V	.	.	.	.	.	.	.	.	.	.	R	G	N	E	L	P	R	P	I	Q	Y	L	C	W	S	P	V	G	S	K	L	A	Y	V	Y	Q	N	.	.	.	.	N	I	Y	L	K	Q	R	P	G	D	P	P	F	Q	I	T	F	N	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	T				.	.	.	.	.	.	.	.	.	.		S	S				S	S	B							S	S	T	T							T	T	.	.	.	.						S	S	T	T	S									.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																												.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	132	.	.	.	.	.	.	.	140	.											.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

	201	.	.	.	.	.	.	.	.	210	.										.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence	E	S	G	A	R	A	E	I	W	S	Y	.	.	.	.	.	.	.	.	.	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence	.	.										.	.	.	.	.	.	.	.	.																																																									.	.	.	.
Template Conservation	.	.																																																																											.	.	.	.
Template Sequence	.	.	G	R	E	N	K	I	F	N	G	I	P	D	W	V	Y	E	E	E	M	L	A	T	K	Y	A	L	W	W	S	P	N	G	K	F	L	A	Y	A	E	F	N	D	T	D	I	P	V	I	A	Y	S	Y	Y	G	D	E	Q	Y	P	R	T	I	N	I	P	Y	P	K	A	G	A	K	N	P	.	.	.	.
Template Known Secondary structure	.	.		B	T	T	T				S	S									T	T		S	S							T	T	S	S										T	T	S										S	S	S	S										B	T	T	S				.	.	.	.
Template Predicted Secondary structure	.	.																																																																											.	.	.	.
Template SS confidence
			187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	R	I	F	I	I	D	T	T	Y	P	A	Y	V	G	P	Q	E	V	P	V	P	A	M	.	.	.	.	.	I	A	S	S	D	Y	Y	F	S	W	L	T	W	V	T	D	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S																.	.	.	.	.			T	S										S	S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
																																		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	V	C	L	Q	W	L	K	R	V	Q	N	V	S	V	L
Template Known Secondary structure									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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