Phyre 2 alignment of P75804 with c1vyhT

Job Description P75804
Confidence 99.36% Date Thu Jan 5 12:14:23 GMT 2012

Rank 70 Aligned Residues 298

% Identity 11% Template c1vyhT_

PDB info PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2

Resolution 3.4 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence	P	R	P	P	E	K	Y	A	L	S	G	H	R	S	P	V	T	R	V	I	F	H	P	V	F	S	V	M	V	S	A	S	E	D	A	T	I	K	V	W	D	Y	E	T	G	D	F	E	R	T	L	.	.	.	.	.	.	.	.	.	.	K	G	H	T	D	S	V	Q	D	I	S	F	D	H	S	G	K	L	L
Template Known Secondary structure			S	S		S							S	S									S	S	S	S							S	S	S							T	T	T								.	.	.	.	.	.	.	.	.	.				S	S									T	T	S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	S	C	S	A	D	M	T	I	K	L	W	D	F	Q	G	F	E	C	I	R	T	M	H	G	H	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	S	S	V	S	I	M	P	N	G	D	H	I	V	S	A	S	R	D	K	T	I	K	M	W	E	V	Q	T	G	Y	C	V
Template Known Secondary structure					T	T	S							T	T	S	S										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S	S							T	T	T							T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.																			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y
Query Conservation
Alig confidence											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Sequence	K	T	F	T	G	H	R	E	W	V	.	.	.	.	.	R	M	V	R	P	N	Q	D	G	T	L	I	A	S	C	S	N	D	Q	T	V	R	V	W	V	V	A	T	K	E	C	K	A	E	L	.	.	.	.	.	.	.	.	.	R	E	H	R	H	V	V	E	C	I	S	W	A	P	E	S	S	Y	S	S	I
Template Known Secondary structure							S	S			.	.	.	.	.							T	T	S	S							T	T	S							T	T	T								.	.	.	.	.	.	.	.	.				S	S		B					B			S		G	G	G	G	G
Template Predicted Secondary structure											.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
	228	.	230	.	.	.	.	.	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	.	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.																												.	.	.
Template Conservation																																																																										.	.	.
Template Sequence	S	E	A	T	G	S	E	G	P	F	L	L	S	G	S	R	D	K	T	I	K	M	W	D	V	S	T	G	M	C	L	M	T	L	V	G	H	D	N	W	V	R	G	V	L	F	H	S	G	G	K	F	I	L	S	C	A	D	D	K	T	L	R	V	W	D	Y	K	N	K	R	C	M	.	.	.	K	T	L	N
Template Known Secondary structure	G	G			S										B	S	S	S							T	T	T	T										S	S									S	S	S	S							S	S	S								S	T	T				.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370

	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence	A	H	E	H	F	V	T	S	L	D	F	H	K	T	A	P	.	Y	V	V	T	G	S	V	D	Q	T	V	K
Template Known Secondary structure			S	S									S	S	S	S	.							T	T	T
Template Predicted Secondary structure																	.
Template SS confidence
	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions