Job Description P75804 Confidence 98.98% Date Thu Jan 5 12:14:23 GMT 2012 Rank 116 Aligned Residues 302 % Identity 12% Template c1pi6A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form Resolution 2.50 Å

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		24	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																																														.	.
Query SS confidence														.	.	.	.	.																																																														.	.
Query Sequence		T	V	N	V	E	V	L	Q	D	K	L	D	.	.	.	.	.	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	.	.
Query Conservation														.	.	.	.	.																																																														.	.
Alig confidence														.	.	.	.	.																						.													.	.	.	.	.																							.	.
Template Conservation																																								.													.	.	.	.	.
Template Sequence		S	I	S	L	K	E	I	I	P	P	Q	P	S	T	Q	R	N	F	T	T	H	L	S	Y	D	P	T	T	N	A	I	A	Y	P	C	G	K	S	.	A	F	V	R	C	L	D	D	G	D	S	K	.	.	.	.	.	V	P	P	V	V	Q	F	T	G	H	G	S	S	V	V	T	T	V	K	F	S	P	I	K
Template Known Secondary structure																B	T	T	B								T	T	T	T							T	T		.									S			S	.	.	.	.	.	S		S						T	T	T	T	S									S	S	T
Template Predicted Secondary structure																																								.													.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	.	G	E	N	N	Q	R	P	T	A	Q	D
Query Conservation																																																																						.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation																								.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	Q	Y	L	C	S	G	D	E	S	G	K	V	I	V	W	G	W	T	F	D	.	.	.	.	.	.	.	.	.	.	K	E	S	N	S	V	E	V	N	V	K	S	E	F	Q	V	L	A	G	P	I	S	D	I	S	W	D	F	E	G	R	R	L	C	V	V	G	E	G	R	D	N	F	G	V	F	I	S
Template Known Secondary structure		T									T	T	S											.	.	.	.	.	.	.	.	.	.	T	T	T	T														S	S									T	T	S										S	S		S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.											.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		W	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	S	L	G	E	V	S	G	H	S	Q	R	I	N	A	C	H	L	K	Q	.	S	R	P	M	R	S	M	T	V	G	D	D	G	S	V	V	F	Y	Q	G	P	P	F	K	F	S	A	S	D	R	T
Template Known Secondary structure		S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B		B				S		S	S									S	.	S	S	S								B	T	T							T	T	T	B								S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		147	.	.																									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		256	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.									.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure														.	.	.	.																																					.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.																																					.	.	.	.	.	.	.	.
Query Sequence		T	W	G	I	N	Y	S	G	F	K	I	P	.	.	.	.	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	.	.	.	.	.	.	.	.	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V
Query Conservation														.	.	.	.																																					.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	H	K	Q	G	S	F	V	R	D	V	E	F	S	P	D	S	G	E	F	V	I	T	V	G	S	D	R	K	I	S	C	F	D	G	K	S	G	E	F	L	K	Y	I	E	D	D	Q	E	P	V	Q	G	G	I	F	A	L	S	W	L	D	S	Q	K	F	A	T	V	G	A	D	A	T	I	R	V	W	D	V
Template Known Secondary structure		S	S		T	T		B								S	T	T									T	T								T	T	T										T	T					S								S	S	S	S							T	T	T							T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	.	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		T	T	S	K	C	V	Q	K	W	T	L	D	K	Q	Q	L	G	N	Q	Q	V	G	V	V	A	T	G	N	G	R	I	I	S	L	S	L	D	G	T	L	N	F	Y	E
Template Known Secondary structure		T	T	T										T	T	S	G	G	G										T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions