Phyre 2 alignment of P75804 with c1nexD

Job Description P75804
Confidence 98.60% Date Thu Jan 5 12:14:23 GMT 2012

Rank 136 Aligned Residues 322

% Identity 9% Template c1nexD_

PDB info PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S
Query Conservation
Alig confidence														.																																			.	.	.	.	.	.	.	.	.	.																.
Template Conservation														.																																			.	.	.	.	.	.	.	.	.	.																.
Template Sequence	Q	R	T	T	L	R	G	H	X	T	S	V	I	.	T	C	L	Q	F	E	D	N	Y	V	I	T	G	A	D	D	K	X	I	R	V	Y	D	S	I	N	K	K	F	L	L	Q	L	S	.	.	.	.	.	.	.	.	.	.	G	H	D	G	G	V	W	A	L	K	Y	A	H	G	G	.	I	L	V	S	G	S
Template Known Secondary structure									S	S	S			.							T	T							T	T	T							T	T	T	T								.	.	.	.	.	.	.	.	.	.			S	S									T	T	T	.
Template Predicted Secondary structure														.																																			.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
	373	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.											420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	.	.	.	.	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence	T	D	R	T	V	R	V	W	D	I	K	K	G	C	C	T	H	V	F	E	G	H	N	S	T	V	R	C	L	D	I	V	E	Y	K	N	I	K	Y	I	V	T	G	S	R	D	N	T	L	H	V	W	K	L	P	K	D	Y	P	L	V	F	H	T	P	E	E	N	P	Y	F	V	G	V	L	R	G	H	X	A
Template Known Secondary structure	T	T	S							T	T	T	T										S	S											T	T									T	T	S																S		T	T	T		T	T									S	S
Template Predicted Secondary structure
Template SS confidence
	441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520

	182	.	.	.	.	.	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.
Query Sequence	K	L	V	R	L	T	D	Q	G	E	I	P	.	.	.	.	.	.	.	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L
Query Conservation													.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																																												.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence	S	V	R	T	V	S	G	H	G	N	I	V	V	S	G	S	Y	D	N	T	L	I	V	W	D	V	A	Q	X	K	C	L	Y	I	L	S	G	H	T	D	R	I	Y	S	T	I	Y	D	H	E	R	K	R	C	I	S	A	S	X	D	T	T	.	.	.	.	I	R	I	W	D	L	E	N	G	E	L	X	Y	T
Template Known Secondary structure									T	T							T	T	S							T	T	T	T										S	S									T	T	T	T							T	T	S		.	.	.	.						T	T	T
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
	532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.					.	.	.	.	.	.	600	.	.	.	.	.	.	.

	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E
Query Conservation																																																	.	.	.	.
Alig confidence																																																	.	.	.	.												.
Template Conservation																																																																.
Template Sequence	L	Q	G	H	T	A	L	V	G	L	L	R	L	S	D	K	F	L	V	S	A	A	A	D	G	S	I	R	G	W	D	A	N	D	Y	S	R	K	F	S	Y	H	H	T	N	L	S	A	I	T	T	F	Y	V	S	D	N	I	L	V	S	G	S	.	E	N	Q	F	N	I	Y	N	L	R	S	G	K	L	V	H
Template Known Secondary structure					S	S									S	S							T	T	S							T	T	T										T	T											S	S							.	T	T							T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
	628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.

	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V
Query Conservation
Alig confidence	.	.																	.
Template Conservation	.	.																	.
Template Sequence	.	.	A	N	I	L	K	D	A	D	Q	I	W	S	V	N	F	K	.	G	K	T	L	V	A	A	V	E	K	D	G	Q	S	F	L	E	I
Template Known Secondary structure	.	.	S		T	T	T	T		S									.	T	T								S	S	S
Template Predicted Secondary structure	.	.																	.
Template SS confidence
			707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.		.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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