Job Description P75804 Confidence 99.71% Date Thu Jan 5 12:14:23 GMT 2012 Rank 26 Aligned Residues 317 % Identity 8% Template c1gq1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Resolution 1.40 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	W	A	A	P	A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q
Query Conservation
Alig confidence																			.																																										.	.	.	.	.
Template Conservation																			.																																										.	.	.	.	.
Template Sequence		A	L	I	D	G	A	T	Y	E	I	K	S	V	L	D	T	G	.	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	R	D	G	K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	A	E	I	K	.	.	.	.	.	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W
Template Known Secondary structure						T	T	T										S	.	S									T	T	S								T	T	S							T	T	S	S	S									.	.	.	.	.			S										S	T	T
Template Predicted Secondary structure																			.																																										.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		97	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		S	R	R	.	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D
Query Conservation					.
Alig confidence					.																															.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	.	.	.	.	.	.	.	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D
Template Known Secondary structure		T	T	T									T	T							T	T	T													.	.	.	.	.	.	.		T	T	T					S											S	S	S	S							T	T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.								.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		Y	T	D	L	D	N	L	K	T	T	E	I	S	A	E	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	.	A	N	A	R	N	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T
Template Known Secondary structure		T	T		S	S	S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S							.		G	G	G	T							T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.																								.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
							256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.													.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence		.	.	.	.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		.	.	.	.	.	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	.	T	E	Q	P	V	F	Y	W	K	D	S	P	.	.	.	.	.	.	.	.	.	.	.	.	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	.	.	.
Query Conservation		.	.	.	.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence		.	.	.	.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S	H	M	G	D	D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G	G	G	S	L	F	I	K	T	H	P	N	S	Q	Y	L	Y	V	D	A	T	L	N	P
Template Known Secondary structure		S	S	S	S	B			T	T							T	T	T								B	S	S	S	S									T	T	T	S	T	T	T	B	T	S								S		S									T	T		S							T	T		S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
						315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.												.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.					.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		.	.	.	.	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	.	.	.	.	.	.	.	.	.	.	.	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	.	.	.	.	E	S	S	G	E	L	L	K	V	S	P	R
Query Conservation		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Alig confidence		.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		E	A	E	I	S	G	S	V	A	V	F	D	I	K	A	M	T	G	D	G	S	D	P	E	F	K	T	L	P	I	A	E	W	A	G	I	T	E	G	Q	P	R	V	V	Q	G	E	F	N	K	D	G	T	E	V	W	F	S	V	W	N	G	K	D	Q	E	S	A	L	V	V	V	D	D	K
Template Known Secondary structure		S					T							G	G	G			S	S	S	S														T			S	S											T	T	S	S										T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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