 |
Job Description | P67701 | Confidence | 98.97% | Date | Thu Jan 5 12:10:49 GMT 2012 |
Rank | 41 | Aligned Residues | 53 |
% Identity | 25% | Template | c3eusB_ |
PDB info |
PDB header:dna binding protein | Chain: B: PDB Molecule:dna-binding protein; |
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
|
Resolution | 1.80 Å |
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
. | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . |  |  | . |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | V | I | R | T | L | M | D | Q | Y | G | L | T | L | S | D | L | P | E | . |
I | G | . |
S | K | S | M | V | S | R | V | L | S | G | K | R | K | L | T | L | E | H | A | K | K | L | A | T | R | F | G | I | S | P |
Query Conservation |   |
|
|   |
|
|   |
|
|
|   |   |
|
|
|
|   |
|
|
|
| . |
|   | . |
|   |
|   |
|
|   |
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |
|
|
|
|   |   |
|
|   |   |   |
|   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|   |   |
Template Sequence |   |
C | Q | R | L | R | Q | A | R | L | D | A | G | L | T | Q | A | D | L | A | E | R | L | D | K | P | Q | S | F | V | A | K | V | E | T | R | E | R | R | L | D | V | I | E | F | A | K | W | M | A | A | C | E | G | L | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |  |  | T | T | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|