Job Description P0AAP5 Confidence 99.96% Date Thu Jan 5 11:13:26 GMT 2012 Rank 1 Aligned Residues 187 % Identity 13% Template c3iwzB_ PDB info PDB header:transcription Chain: B: PDB Molecule:catabolite activation-like protein; PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris Resolution 2.30 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																		.
Query SS confidence																																																			.	.	.	.																		.
Query Sequence		G	K	L	D	K	C	L	S	R	Y	G	T	R	F	E	F	N	N	E	K	Q	V	I	F	S	S	D	V	N	N	E	D	T	F	V	I	L	E	G	V	I	S	L	R	R	E	E	N	V	.	.	.	.	L	I	G	I	T	Q	A	P	Y	I	M	G	L	A	D	G	L	.	M	K	N	D	I	P	Y	K	L
Query Conservation																																																			.	.	.	.																		.
Alig confidence																						.																													.	.	.	.																		.
Template Conservation																						.
Template Sequence		A	G	T	I	E	R	F	L	A	H	S	H	R	R	R	Y	P	T	R	T	.	D	V	F	R	P	G	D	P	A	G	T	L	Y	Y	V	I	S	G	S	V	S	I	I	A	E	E	D	D	D	R	E	L	V	L	G	Y	F	G	S	G	E	F	V	G	E	M	G	L	F	I	E	S	D	T	R	E	V	I	L
Template Known Secondary structure											T	S							S	S		.					T	T	S	B										S									T	T	S										T	T				S						S			S	B			S
Template Predicted Secondary structure																						.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																																																.	.	.
Query SS confidence																										.	.	.	.	.	.																																																.	.	.
Query Sequence		I	S	E	G	N	C	T	G	Y	H	L	P	A	K	Q	T	I	T	L	I	E	Q	N	Q	.	.	.	.	.	.	L	W	R	D	A	F	Y	W	L	A	W	Q	N	R	I	L	E	L	R	D	V	Q	L	I	G	H	N	S	Y	E	Q	I	R	A	T	L	L	S	M	I	D	W	N	E	E	L	R	.	.	.
Query Conservation																										.	.	.	.	.	.																																																.	.	.
Alig confidence																										.	.	.	.	.	.																																																.	.	.
Template Conservation
Template Sequence		R	T	R	T	Q	C	E	L	A	E	I	S	Y	E	R	L	Q	Q	L	F	Q	T	S	L	S	P	D	A	P	R	I	L	Y	A	I	G	V	Q	L	S	K	R	L	L	D	T	T	R	K	A	S	R	L	A	F	L	D	V	T	D	R	I	V	R	T	L	H	D	L	S	K	E	P	E	A	M	S	H	P	Q
Template Known Secondary structure				S	S																		T	T	T	T	T	T																													S														T	T	S	T	T				B	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
				158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	R	I	G	V	M	N	Y	I	H	Q	R	T	R	I	S	R	S	V	V	A	E	V	L	A	A	L	R	K	G	G	Y	I	E	M	N	K	G	K	L	V	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		G	T	Q	L	R	V	S	R	Q	E	L	A	R	L	V	G	C	S	R	E	M	A	G	R	V	L	K	K	L	Q	A	D	G	L	L	H	A	R	G	K	T	V	V	L
Template Known Secondary structure		B															T	S															T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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