Job Description P0AAP5 Confidence 99.55% Date Thu Jan 5 11:13:26 GMT 2012 Rank 24 Aligned Residues 126 % Identity 12% Template c3gydA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:cyclic nucleotide-binding domain; PDBTitle: crystal structure of a cyclic nucleotide-binding domain (mfla_1926)2 from methylobacillus flagellatus kt at 1.79 a resolution Resolution 1.79 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		G	K	L	D	K	C	L	S	R	Y	G	T	R	F	E	F	N	N	E	K	Q	V	I	F	S	S	D	V	N	N	E	D	T	F	V	I	L	E	G	V	I	S	L	R	R	E	E	N	V	.	.	.	.	L	I	G	I	T	Q	A	P	Y	I	M	G	L	A	D	G	L	M	K	N	D	I	P	Y	K	L	I
Query Conservation																																																			.	.	.	.
Alig confidence																						.																													.	.	.	.
Template Conservation																						.
Template Sequence		N	E	E	V	R	Y	L	C	S	Y	X	Q	C	Y	A	A	P	R	D	C	.	Q	L	L	T	E	G	D	P	G	D	Y	L	L	L	I	L	T	G	E	V	N	V	I	K	D	I	P	N	K	G	I	Q	T	I	A	K	V	G	A	G	A	I	I	G	E	X	S	X	I	D	G	X	P	R	S	A	S	C	V
Template Known Secondary structure										T	T								T	T		.					T	T	S																				T	T	T										T	T				S											S	S
Template Predicted Secondary structure																						.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		S	E	G	N	C	T	G	Y	H	L	P	A	K	Q	T	I	T	L	I	E	Q	N	Q	L	.	.	.	.	.	W	R	D	A	F	Y	W	L	A	W	Q	N	R	I	L	E	L	R	D	V	Q	L	I	G	H	N	S
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.
Template Conservation
Template Sequence		A	S	L	P	T	D	F	A	V	L	S	R	D	A	L	Y	Q	L	L	A	N	X	P	K	L	G	N	K	V	L	I	R	L	L	Q	L	L	T	A	R	F	R	E	S	Y	D	R	I	L	P	K	T	L	G	E	L
Template Known Secondary structure																																																		G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions