 |
Job Description | P0AAP5 | Confidence | 97.05% | Date | Thu Jan 5 11:13:26 GMT 2012 |
Rank | 73 | Aligned Residues | 71 |
% Identity | 14% | Template | c3by6C_ |
PDB info |
PDB header:transcription regulator | Chain: C: PDB Molecule:predicted transcriptional regulator; |
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
|
Resolution | 2.20 Å |
|
 |
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | |
. | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | N | S | Y | E | Q | I | R | A | T | L | L | S | M | I | D | W | N | E | E | L | R | S | R | I | G | . |
V | M | N | Y | I | H | Q | R | T | R | I | S | R | S | V | V | A | E | V | L | A | A | L | R | K | G | G | Y | I | E | M | N | K | G | K | L | V | A | I | N | R | L | P | S | E |
Query Conservation |   |
  |   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . |
|   |   |   |
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |
|   |   |
|   |   |   |
|   |
|   |   |   |
|
|   |
|   |   |
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
|   |   |
|
|
|   |   |   |
|
|   |   |   |   |
|
|
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
R | P | V | Y | L | Q | L | V | D | R | I | K | N | E | V | A | T | D | V | L | S | A | N | D | Q | L | P | S | V | R | E | T | A | L | Q | E | K | I | N | P | N | T | V | A | K | A | Y | K | E | L | E | A | Q | K | V | I | R | T | I | P | G | K | G | T | F | I | T | G | N | T | A | S |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
| T | T |
| B |
|
|
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | T | T | T |  |  |  |  |
| S |
|  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|