Job Description P0AAP5 Confidence 47.60% Date Thu Jan 5 11:13:26 GMT 2012 Rank 443 Aligned Residues 94 % Identity 15% Template c2zmeA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																						.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Query Sequence		I	E	Q	N	Q	L	W	R	D	A	F	Y	W	L	A	W	Q	N	R	I	.	.	.	.	.	.	L	E	L	R	D	V	Q	L	I	G	H	N	S	Y	E	Q	I	R	A	T	L	L	S	M	I	D	W	N	E	E	L	R	S	R	I	G	V	M	N	Y	I	H	Q	R	T	R	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	K	N	P	E	F	R	V	Q	F	Q	D	M	C	A	T	I	G	V	D	P	L	A	S	G	K	G	F	W	S	E	M	L	G	V	G	D	F	Y	Y	E	L	G	V	Q	I	I	E	V	C	L	A	L	K	H	R	N	G	G	L	I	T	L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q
Template Known Secondary structure																				T			T	T	S		T	T	S																															T	T															T		S	S
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
			172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																			.	.	.	.
Query SS confidence		.																			.	.	.	.
Query Sequence		.	I	S	R	S	V	V	A	E	V	L	A	A	L	R	K	G	G	Y	.	.	.	.	I	E	M	N	K	G	K	L	V	A
Query Conservation		.																			.	.	.	.
Alig confidence		.																			.	.	.	.
Template Conservation
Template Sequence		D	V	S	Q	D	D	L	I	R	A	I	K	K	L	K	A	L	G	T	G	F	G	I	I	P	V	G	G	T	Y	L	I	Q
Template Known Secondary structure																G	G	G		S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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