 |
Job Description | P0AAP5 | Confidence | 81.77% | Date | Thu Jan 5 11:13:26 GMT 2012 |
Rank | 255 | Aligned Residues | 70 |
% Identity | 9% | Template | c2fqpD_ |
PDB info |
PDB header:metal binding protein | Chain: D: PDB Molecule:hypothetical protein bp2299; |
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
|
Resolution | 1.80 Å |
|
 |
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | R | F | E | F | N | N | E | K | Q | V | I | F | S | S | D | V | N | N | E | D | T | F | V | I | L | E | G | V | I | S | L | R | R | E | E | N | V | L | I | G | I | T | Q | A | P | Y | I | M | G | L | A | D | G | L | M | K | N | D | I | P | Y | K | L | I | S | E | G | N | C | T | G | Y | H | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |
|
|   |
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   | . | . | . | . | . |   |   |
|   |
|   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |
|
Template Sequence |   |
T | E | W | R | F | P | P | G | G | E | T | G | W | H | R | H | S | X | D | Y | V | V | V | P | X | T | T | G | P | L | L | L | E | T | P | E | G | S | V | T | S | Q | L | T | R | G | V | S | Y | . |
. |
. |
. |
. |
T | R | P | E | G | V | E | H | N | V | I | N | P | S | D | T | E | F | V | F | V |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T |
| B |
|
| S |  |  |
|
| S |
|  |  |  |  |  | S | S |
|  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
| T | T |
|
|  | . | . | . | . | . |  |  |
| T | T |
|  |  |  |  |  |
|
| S | S | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  | . | . | . | . | . |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|