Job Description P0AAP5 Confidence 99.82% Date Thu Jan 5 11:13:26 GMT 2012 Rank 18 Aligned Residues 176 % Identity 11% Template c2fmyB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form) Resolution 2.20 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		L	S	R	Y	G	T	R	F	E	F	N	N	E	K	Q	V	I	F	S	S	D	V	N	N	E	D	T	F	V	I	L	E	G	V	I	S	L	R	R	E	E	N	V	.	.	.	L	I	G	I	T	Q	A	P	Y	I	M	G	L	A	D	G	L	M	K	N	D	I	P	Y	K	L	I	S	E	G	N	C	T	G
Query Conservation																																													.	.	.
Alig confidence																.																													.	.	.													.	.	.	.	.	.	.
Template Conservation																.																																												.	.	.	.	.	.	.
Template Sequence		V	L	K	E	F	R	E	Q	R	Y	S	K	K	A	.	I	L	Y	T	P	N	T	E	R	N	L	V	F	L	V	K	S	G	R	V	R	V	Y	L	A	Y	E	D	K	E	F	T	L	A	I	L	E	A	G	D	I	F	C	.	.	.	.	.	.	.	T	H	T	R	A	F	I	Q	A	M	E	D	T	T	I
Template Known Secondary structure		T	G	G	G								T	T		.					S	S		S	S									S									S	S										T	T					.	.	.	.	.	.	.	S		S	S						S	S	S
Template Predicted Secondary structure																.																																												.	.	.	.	.	.	.
Template SS confidence
		1024	.	.	.	.	.	1030	.	.	.	.	.	.	.		.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080								.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																										.	.	.	.	.	.
Query SS confidence																		.																																										.	.	.	.	.	.
Query Sequence		Y	H	L	P	A	K	Q	T	I	T	L	I	E	Q	N	Q	.	L	W	R	D	A	F	Y	W	L	A	W	Q	N	R	I	L	E	L	R	D	V	Q	L	I	G	H	N	S	Y	E	Q	I	R	A	T	L	L	S	M	I	D	.	.	.	.	.	.	W	N	E	E	L	R	S	R	I	G	V	M	N	Y	I	H
Query Conservation																		.																																										.	.	.	.	.	.
Alig confidence																		.																																										.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	T	D	I	R	N	F	Q	N	I	V	V	E	F	P	A	F	S	L	N	M	V	K	V	L	G	D	L	L	K	N	S	L	T	I	I	N	G	L	V	F	K	D	A	R	L	R	L	A	E	F	L	V	Q	A	A	M	D	T	G	L	K	V	P	Q	G	I	K	L	E	L	G	L	N	T	E	E	I	A
Template Known Secondary structure																	T																										T																							T	T							S
Template Predicted Secondary structure
Template SS confidence
		1096	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		Q	R	T	R	I	S	R	S	V	V	A	E	V	L	A	A	L	R	K	G	G	Y	I	E	.	M	N	K	G	K	L	V	A	I	N
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		L	M	L	G	T	T	R	Q	T	V	S	V	L	L	N	D	F	K	K	M	G	I	L	E	R	V	N	Q	R	T	L	L	L	K	D
Template Known Secondary structure					T	S															T	T	S						T	T					S
Template Predicted Secondary structure
Template SS confidence
		1176	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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