Job Description P0AAP5 Confidence 99.94% Date Thu Jan 5 11:13:26 GMT 2012 Rank 2 Aligned Residues 189 % Identity 13% Template c2bgcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:prfa; PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes Resolution 2.3 Å

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		12	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.
Predicted Secondary structure										.																																										.	.	.	.																						.	.
Query SS confidence										.																																										.	.	.	.																						.	.
Query Sequence		G	K	L	D	K	C	L	S	.	R	Y	G	T	R	F	E	F	N	N	E	K	Q	V	I	F	S	S	D	V	N	N	E	D	T	F	V	I	L	E	G	V	I	S	L	R	R	E	E	N	V	.	.	.	.	L	I	G	I	T	Q	A	P	Y	I	M	G	L	A	D	G	L	M	K	N	D	.	.	I	P	Y
Query Conservation										.																																										.	.	.	.																						.	.
Alig confidence										.													.																													.	.	.	.																						.	.
Template Conservation																							.
Template Sequence		E	E	F	K	K	Y	L	E	T	N	G	I	K	P	K	Q	F	H	K	K	E	.	L	I	F	N	Q	W	D	P	Q	E	Y	C	I	F	L	Y	D	G	I	T	K	L	T	S	I	S	E	N	G	T	I	M	N	L	Q	Y	Y	K	G	A	F	V	I	M	S	G	F	I	D	T	E	T	S	V	G	Y	Y	N
Template Known Secondary structure											T	T								T	T		.					T	T												S									T	T	S										S	S					S	B		T	T	T			B	S
Template Predicted Secondary structure																							.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																												.																																																.	.	.	.	.	.
Query SS confidence																												.																																																.	.	.	.	.	.
Query Sequence		K	L	I	S	E	G	N	C	T	G	Y	H	L	P	A	K	Q	T	I	T	L	I	E	Q	N	Q	.	L	W	R	D	A	F	Y	W	L	A	W	Q	N	R	I	L	E	L	R	D	V	Q	L	I	G	H	N	S	Y	E	Q	I	R	A	T	L	L	S	M	I	D	W	N	E	E	L	R	.	.	.	.	.	.
Query Conservation																												.																																																.	.	.	.	.	.
Alig confidence																												.																																																.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	V	I	S	E	Q	A	T	A	Y	V	I	K	I	N	E	L	K	E	L	L	S	K	N	L	T	H	F	F	Y	V	F	Q	T	L	Q	K	Q	V	S	Y	S	L	A	K	F	N	D	F	S	I	N	G	K	L	G	S	I	C	S	Q	L	L	I	L	T	Y	V	Y	G	K	E	T	P	D	G	I	K	I
Template Known Secondary structure						S	S																																														T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
			158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.																				.
Query SS confidence		.																				.
Query Sequence		.	S	R	I	G	V	M	N	Y	I	H	Q	R	T	R	I	S	R	S	V	.	V	A	E	V	L	A	A	L	R	K	G	G	Y	I	E	M	N	K	G	K	L	V	A	I	N
Query Conservation		.																				.
Alig confidence		.																				.
Template Conservation
Template Sequence		T	L	D	N	L	T	M	Q	E	L	G	Y	S	S	G	I	A	H	S	S	A	V	S	R	I	I	S	K	L	K	Q	E	K	V	I	V	Y	K	N	S	C	F	Y	V	Q	N
Template Known Secondary structure				S											T	T																	T	T	S					T	T					S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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