Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAP5
Confidence99.94%DateThu Jan 5 11:13:26 GMT 2012
Rank3Aligned Residues192
% Identity12%Templatec1zybA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcription regulator, crp family; PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60 .........70.........80.
Predicted Secondary structure 
















....











.
Query SS confidence 





















































. . . .




















.
Query Sequence  PLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENV. . . . LIGITQAPYIMGLADGLMKND.
Query Conservation 
      
   
              

   
     

 
  
 
 
      ....       
   
         .
Alig confidence 














..







.



























....




















.
Template Conservation         
       ..     


. 
   

     
 
  
 
        
          
   
          
Template Sequence  CHEDFTSILDKVKLH. . FIKHKAGE. TIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGXNTN
Template Known Secondary structure 
TS

..
TT
.
TTSB

S
GGGS
SS
GGGGSSS

B
Template Predicted Secondary structure 


..



.


























Template SS confidence 















































































   18.20.........30.. .......40 .........50.........60.........70.........80.........90....
 
   82.......90.........100.........110 .........120.........130.........140.........150.........160
Predicted Secondary structure 




.









Query SS confidence 




























.

















































Query Sequence  IPYKLISEGNCTGYHLPAKQTITLIEQNQ. LWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
Query Conservation        
  
  
  
    
        .        
                     

   
  
           
Alig confidence 




























.

















































Template Conservation        
        
                  
                              
            
 
Template Sequence  YASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYXNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFK
Template Known Secondary structure 
SSSS
TGGGSTTS



STT
SSSSS
Template Predicted Secondary structure 





















Template SS confidence 















































































   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   161........170.........180.........190.........200.
Predicted Secondary structure 










Query SS confidence 








































Query Sequence  GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAIN
Query Conservation   
   

   
 

  
 
 
  
   
 
   

 
  

Alig confidence 








































Template Conservation 

   

  

 

 



 
  
   
 
      
 
 
Template Sequence  VKXDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPD
Template Known Secondary structure 

TS
TTS
TTS
Template Predicted Secondary structure 











Template SS confidence 








































   175....180.........190.........200.........210.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions