Job Description P77739 Confidence 100.00% Date Thu Jan 5 12:32:23 GMT 2012 Rank 6 Aligned Residues 283 % Identity 12% Template c3hamA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.																			.
Query SS confidence																																																					.																			.
Query Sequence		M	W	Q	A	I	S	R	L	L	S	E	Q	L	G	E	G	E	I	E	L	R	N	E	L	P	G	G	E	V	H	A	A	W	H	L	R	Y	A	G	H	D	F	F	V	K	C	D	E	R	E	L	.	L	P	G	F	T	A	E	A	D	Q	L	E	L	L	S	R	S	K	.	T	V	T	V	P	K	V	W	A
Query Conservation																																																					.																			.
Alig confidence																																					.	.	.														.																			.
Template Conservation																																					.	.	.
Template Sequence		M	V	N	L	D	A	E	I	Y	E	H	L	N	K	Q	I	K	I	N	E	L	R	Y	L	S	S	G	D	D	S	D	T	F	L	C	.	.	.	N	E	Q	Y	V	V	K	V	P	K	R	D	S	V	R	I	S	Q	K	R	E	F	E	L	Y	R	F	L	E	N	C	K	L	S	Y	Q	I	P	A	V	V	Y
Template Known Secondary structure																	S			S									S	S							.	.	.	T	T	T							S	S	S																	T	T	S			S	S	B
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	D	R	D	Y	S	F	L	V	M	D	Y	L	P	P	R	P	L	D	A	H	S	A	F	I	L	G	Q	Q	I	A	R	L	H	Q	W	S	D	Q	P	Q	F	G	L	D	F	D	N	A	L	S	T	T	P	Q	P	N	T	W	Q	R	R	W	S	T	F	F	A	E	Q	R	I	G	W	Q	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	D	R	F	N	I	M	K	Y	I	K	G	E	R	I	T	Y	E	Q	Y	H	K	L	S	E	K	E	K	D	A	L	A	Y	D	E	A	T	F	L	K	E	L	H	S	I	E	I	D	C	S	V	S	L	F	S	D	A	L	V	N	K	K	D	K	F	L	Q	D	K	K	L	L	I	S	I	L	E	K	E
Template Known Secondary structure				S	S										B								T	T	S																						S				T	T	S					T	T	B																					T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																		.							.														.	.
Query SS confidence																																																		.							.														.	.
Query Sequence		A	A	E	K	G	I	A	F	G	N	I	D	A	I	V	E	H	I	Q	Q	R	L	A	S	H	Q	P	Q	P	S	L	L	H	G	D	L	W	S	G	N	C	A	L	G	P	D	G	P	.	Y	I	F	D	P	A	.	C	Y	W	G	D	R	E	C	D	L	A	M	L	.	.	P	L	H	T	E	Q	P	P	Q
Query Conservation																																																		.							.														.	.
Alig confidence																																																		.							.														.	.
Template Conservation
Template Sequence		Q	L	L	T	D	E	M	L	E	H	I	E	T	I	Y	E	N	I	L	N	N	A	V	L	F	K	Y	T	P	C	L	V	H	N	D	F	S	A	N	N	M	I	F	R	N	N	R	L	F	G	V	I	D	F	G	D	F	N	V	G	D	P	D	N	D	F	L	C	L	L	D	C	S	T	D	D	F	G	K	E
Template Known Secondary structure		T																			T		G	G	G	G									S			S	G	G	G					T	T									T	T						G	G	G	G	T	T	T	T	T	S	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure												.	.																								.
Query SS confidence												.	.																								.
Query Sequence		I	Y	D	G	Y	Q	S	V	S	P	.	.	L	P	A	D	F	L	E	R	Q	P	V	Y	Q	L	Y	T	L	L	N	R	A	R	L	.	F	G	G	Q	H	L	V	I	A	Q	Q	S	L	D	R	L	L	A	A
Query Conservation												.	.																								.
Alig confidence												.	.																								.
Template Conservation
Template Sequence		F	G	R	K	V	L	K	Y	Y	Q	H	K	A	P	E	V	A	E	R	K	A	E	L	N	D	V	Y	W	S	I	D	Q	I	I	Y	G	Y	E	R	K	D	R	E	M	L	I	K	G	V	S	E	L	L	Q	T
Template Known Secondary structure									T	T	T		S															T												T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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