Job Description P77739 Confidence 99.90% Date Thu Jan 5 12:32:23 GMT 2012 Rank 23 Aligned Residues 271 % Identity 13% Template c3f2rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:choline kinase alpha; PDBTitle: crystal structure of human choline kinase alpha in complex2 with hemicholinium-3 Resolution 2.35 Å

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		3	.	.	.	.	.	.	10	.	.	.	.							.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure														.	.	.	.	.	.																																					.	.	.	.
Query SS confidence														.	.	.	.	.	.																																					.	.	.	.
Query Sequence		Q	A	I	S	R	L	L	S	E	Q	L	G	.	.	.	.	.	.	E	G	E	I	E	L	R	N	E	L	P	G	G	E	V	H	A	A	W	H	L	R	Y	A	G	H	D	F	F	V	K	C	D	E	R	E	.	.	.	.	L	L	P	G	F	T	A	E	A	D	Q	L	E	L	L	S	R	S	K	T	V	T
Query Conservation														.	.	.	.	.	.																																					.	.	.	.
Alig confidence														.	.	.	.	.	.																																					.	.	.	.																					.	.
Template Conservation																																																																																.	.
Template Sequence		R	R	A	Y	L	W	C	K	E	F	L	P	G	A	W	R	G	L	R	E	D	E	F	H	I	S	V	I	R	G	G	L	S	N	M	L	F	Q	C	S	L	P	D	T	T	A	T	L	G	D	E	P	R	K	V	L	L	R	L	Y	G	A	M	V	L	E	S	V	M	F	A	I	L	A	E	R	S	L	.	.
Template Known Secondary structure												S		G	G	G	T	T			G	G	G									S	S	S										T	T				S	S	S			S																							T	T	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	K	V	W	A	V	G	A	D	R	D	Y	S	F	L	V	M	D	Y	L	P	P	R	P	L	D	A	H	S	A	F	I	L	G	Q	Q	I	A	R	L	H	Q	W	S	D	Q	P	Q	F	G	L	D	F	D	N	A	L	S	T	T	P	Q	P	N	T	W	Q	R	R	W	S	T	F	F	A	E	Q	R	I
Query Conservation
Alig confidence												.	.	.	.																																													.	.	.
Template Conservation												.	.	.	.																																													.	.	.
Template Sequence		G	P	K	L	Y	G	I	F	P	Q	.	.	.	.	G	R	L	E	Q	F	I	P	S	R	R	L	D	T	E	E	L	S	L	P	D	I	S	A	E	I	A	E	K	M	A	T	F	H	G	M	K	M	P	F	N	K	E	P	.	.	.	K	W	L	F	G	T	M	E	K	Y	L	K	E	V	L	R	I	K	F
Template Known Secondary structure		S								T	T	.	.	.	.														G	G	G	G	G	S																T				S	S			S		.	.	.																T
Template Predicted Secondary structure												.	.	.	.																																													.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.												.												.
Query SS confidence																																																			.	.	.	.	.	.	.												.												.
Query Sequence		G	W	Q	L	E	L	A	A	E	K	G	I	A	F	G	N	I	D	A	I	V	E	H	I	Q	Q	R	L	A	S	H	Q	P	Q	P	S	L	L	H	G	D	L	W	S	G	N	C	A	L	.	.	.	.	.	.	.	G	P	D	G	P	Y	I	F	D	P	A	.	C	Y	W	G	D	R	E	C	D	L	A	.
Query Conservation																																																			.	.	.	.	.	.	.												.												.
Alig confidence																																																			.	.	.	.	.	.	.												.												.
Template Conservation
Template Sequence		T	E	E	S	R	I	K	K	L	H	K	L	L	S	Y	N	L	P	L	E	L	E	N	L	R	S	L	L	E	S	T	P	S	P	V	V	F	C	H	N	D	C	Q	E	G	N	I	L	L	L	E	G	R	E	N	S	E	K	Q	K	L	M	L	I	D	F	E	Y	S	S	Y	N	Y	R	G	F	D	I	G	N
Template Known Secondary structure			S												T	T															T	S									S			S	G	G	G					T	T	G	G	G		S	S		S							T	T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
			224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	M	L	P	L	H	T	E	Q	P	P	Q	I	Y	D	G	Y	Q	S	V	S	P	L	P	A	D	F	L	E	R	Q	P	V	Y	Q	L	Y	T	L	L	N	R	A	R	L	F	G	G	Q	H	L	V	I	A	Q	Q	S	L	D	R	L	L
Query Conservation		.
Alig confidence		.																																					.	.
Template Conservation																																							.	.
Template Sequence		H	F	C	E	W	M	Y	D	Y	S	Y	E	K	Y	P	F	F	R	A	N	I	R	K	Y	P	T	K	K	Q	Q	L	H	F	I	S	S	Y	.	.	L	P	A	F	Q	D	F	E	N	L	S	T	E	E	K	S	I	I	K	E	E	M	L
Template Known Secondary structure						T	T			T	T		S	S	T	T	S					G	G	G	S														.	.							G	G	G	S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions