Job Description P77739 Confidence 99.88% Date Thu Jan 5 12:32:23 GMT 2012 Rank 24 Aligned Residues 226 % Identity 16% Template c3csvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: crystal structure of a putative aminoglycoside phosphotransferase2 (yp_614837.1) from silicibacter sp. tm1040 at 2.15 a resolution Resolution 2.15 Å

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		33	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		W	H	L	R	Y	.	A	G	H	D	F	F	V	K	C	D	E	R	E	L	L	P	G	F	T	A	E	A	D	Q	L	E	L	L	S	R	S	K	T	V	T	V	P	K	V	W	A	V	G	A	D	R	D	Y	S	F	L	V	M	D	Y	L	P	P	R	P	L	D	A	H	S	A	F	I	L	G	Q	Q	I	A
Query Conservation							.
Alig confidence							.																																	.															.	.
Template Conservation																																								.															.	.
Template Sequence		Q	R	L	R	S	P	T	G	A	K	A	V	L	X	D	W	S	P	E	E	G	G	D	T	Q	P	F	V	D	L	A	Q	Y	L	R	N	L	D	.	I	S	A	P	E	I	Y	A	E	E	H	A	R	G	.	.	L	L	L	I	E	D	L	G	D	A	L	F	T	E	V	I	N	N	D	P	A	Q	E	X	P
Template Known Secondary structure							T	T											T	T	T	T			S													T	T	.		B									T	T	T	T	.	.									S		B									G	G	G
Template Predicted Secondary structure																																								.															.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		R	L	H	Q	W	S	D	Q	P	Q	F	G	L	D	F	D	N	A	L	S	T	T	P	Q	P	N	T	W	Q	R	R	W	S	T	F	F	A	E	Q	R	I	G	W	Q	L	E	L	A	A	E	K	G	I	A	F	G	N	I	D	A	I	V	E	H	I	Q	Q	R	L	A	S	H	Q	P	Q	P	.	S	L	L
Query Conservation																																																																														.
Alig confidence												.	.	.	.	.	.																																																													.
Template Conservation												.	.	.	.	.	.
Template Sequence		L	Y	R	A	A	V	D	L	L	I	.	.	.	.	.	.	H	L	H	D	A	Q	T	P	E	L	A	R	L	D	P	E	T	L	S	E	X	T	R	L	A	F	S	E	Y	R	Y	A	I	L	G	D	A	A	E	D	N	R	K	R	F	E	H	R	F	A	Q	I	L	S	A	Q	L	E	G	D	X	V	F	V
Template Known Secondary structure												.	.	.	.	.	.				T	S							B									T	T	T					T							S	S																							S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.								.																					.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.								.																					.	.	.	.	.	.
Query Sequence		H	G	D	L	W	S	G	N	C	A	L	G	P	D	G	.	.	.	.	.	P	Y	I	F	D	P	A	.	C	Y	W	G	D	R	E	C	D	L	A	M	L	P	L	H	T	E	Q	P	.	.	.	.	.	.	P	Q	I	Y	D	G	Y	Q	S	V	S	P	L	P	A	D	F	L	E	R	Q	P	V	Y	Q	L
Query Conservation																	.	.	.	.	.								.																					.	.	.	.	.	.
Alig confidence																	.	.	.	.	.								.																					.	.	.	.	.	.														.	.
Template Conservation																																																																					.	.
Template Sequence		H	R	D	F	H	A	Q	N	L	L	W	L	P	E	R	E	G	L	A	R	V	G	V	I	D	F	Q	D	A	K	L	G	H	R	A	Y	D	L	V	S	L	L	Q	D	A	R	R	D	V	P	A	Q	V	E	A	Q	X	I	D	H	Y	I	Q	A	T	G	V	.	.	D	E	S	H	F	R	S	A	Y	A	V
Template Known Secondary structure			S			S	G	G	G					T	T	S		G	G	G	G							T	T						T	T								S		T	T	S																			T		.	.
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.
		259	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	L	L	N	R	A	R	L	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	V	Q	R	N	X	R	I	L	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions