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Job DescriptionP77739
Confidence97.34%DateThu Jan 5 12:32:23 GMT 2012
Rank95Aligned Residues135
% Identity18%Templatec2r7bA_
PDB info PDB header:signaling protein, transferaseChain: A: PDB Molecule:phosphoinositide-dependent protein kinase 1; PDBTitle: crystal structure of the phosphoinositide-dependent kinase-2 1 (pdk-1)catalytic domain bound to a dibenzonaphthyridine3 inhibitor
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30....... ..40........ .50.........60.........70.........80........
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Query Sequence  EIELRNELPGGEVHAAWHLRY. . AGHDFFVKCDE. . . . . . RELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFL
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Template Sequence  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL. . . DHPFFVKLYFTFQDDEKLYF
Template Known Secondary structure  G
SS
TTT

TT
T
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   81........90.........100.........110.........120.........130....... ..140.........150.......
 
   8990.........100.........110.........120.........130.........140.........150.........160........
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Query Sequence  VMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGN
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Template Sequence  GLSYAKNGE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LLKYIRKIGSFDET
Template Known Secondary structure 

TT
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   158.160...... ...170.........180
 
   169170.........180.........190.........200..... ....210.
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Query Sequence  IDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDG. PYIFDP
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Template Sequence  CTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDF
Template Known Secondary structure  TT




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   181........190.........200.........210.........220....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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