Job Description P0CF70 Confidence 81.39% Date Wed Jan 25 15:20:37 GMT 2012 Rank 185 Aligned Residues 81 % Identity 10% Template d1s7oa_ SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors YlxM/p13-like Resolution 2.31

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.
Predicted Secondary structure																	.																																																						.	.	.
Query SS confidence																	.																																																						.	.	.
Query Sequence		S	P	E	F	R	S	E	A	L	K	L	A	E	R	I	.	G	V	T	A	A	A	R	E	L	S	L	Y	E	S	Q	L	Y	N	W	R	S	K	Q	Q	N	Q	Q	T	S	S	E	R	E	L	E	M	S	T	E	I	A	R	L	K	R	Q	L	A	E	R	D	E	E	.	.	.	L	A	I	L	Q	K	A	A
Query Conservation																	.																																																						.	.	.
Alig confidence																	.																																																						.	.	.
Template Conservation
Template Sequence		T	D	K	Q	M	N	Y	I	E	L	Y	Y	A	D	D	Y	S	L	A	E	I	A	D	E	F	G	V	S	R	Q	A	V	Y	D	N	I	K	R	T	E	K	I	L	E	T	Y	E	M	K	L	H	M	Y	S	D	Y	V	V	R	S	E	I	F	D	D	M	I	A	H	Y	P	H	D	E	Y	L	Q	E	K	I
Template Known Secondary structure															T												T																																													T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		92	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	L	T	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions