Return to main results Retrieve Phyre Job Id

Job DescriptionP0CF70
Confidence98.05%DateWed Jan 25 15:20:37 GMT 2012
Rank6Aligned Residues51
% Identity12%Templatec6paxA_
PDB info PDB header:gene regulation/dnaChain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30 .........40.........50.........60...
Predicted Secondary structure 





.











Query SS confidence 

















.
































Query Sequence  KQHSPEFRSEALKLAERI. GVTAAARELSLYESQLYNWRSKQQNQQTSSERE
Query Conservation 
 

 


  

 
    . 
  

  


   

  
              
Alig confidence 

















.
































Template Conservation 



   
  

 
   
 
   

  
 

  

 


 
    
      
Template Sequence  RPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYATGSIRPRA
Template Known Secondary structure  S


TT

T

S

S


Template Predicted Secondary structure 
















Template SS confidence 



















































   16...20.........30.........40.........50.........60.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions