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Job DescriptionP14375
Confidence99.81%DateThu Jan 5 11:33:59 GMT 2012
Rank73Aligned Residues251
% Identity21%Templatec3pfiB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
Resolution2.69 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  SQFGMVGKSPAMQHLLSEIALV. . . APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH
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Template Sequence  NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE. . . XSANIKTTAAPXIEKSGDLAAIL. .
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STT

S
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SSTTSS...TT

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Query Sequence  EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR
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Template Sequence  . . . . . . . . . . . . . . . TNLSEGDILFIDEIHRLSPAIEEVLYPAXEDYP. . . . . . . . . . . . KFTLIGATTRA. . . . . . . GX
Template Known Secondary structure  ...............T

TT
SGGG

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G.......GG
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Query Sequence  FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL.
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Template Sequence  LSNPLRDRFGXQFRLEFY. . . KDSELALILQKAALKLN. . . . . . . KTCEEKAALEIAKR. SRSTPRIALRLLKRVRDFAD
Template Known Secondary structure  S
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   164.....170.........180. ........190........ .200.........210.. .......220.........230..
 
   373......380.........390.........400.........410.........420.........430.........440.
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Query Sequence  . . TGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR
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Template Sequence  VNDEEIITEKRANEALNSLGVNELGFD. . . . AXDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEP
Template Known Secondary structure  TT
S
T

TT


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B
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   233......240.........250......... 260.........270.........280.........290.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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