Job Description P14375 Confidence 99.06% Date Thu Jan 5 11:33:59 GMT 2012 Rank 162 Aligned Residues 204 % Identity 19% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.											.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	A	V	T	A	S	Q	F	G	M	V	G	K	S	P	A	M	Q	H	L	L	S	E	I	.	.	.	.	.	.	.	.	.	.	A	L	V	A	P	S	E	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	I	H	A	S	S	A	R	S	E	K	P	L	V	T	L	N	C	A	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.																																.	.	.										.	.
Template Conservation																																																																				.	.	.										.	.
Template Sequence		S	E	K	P	N	V	K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	S	T	F	F	S	V	S	S	.	.
Template Known Secondary structure									S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	.	.	.	T									.	.
Template Predicted Secondary structure																																																																				.	.	.										.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.												250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	D	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	M	M	.	.	.	.	.	.	.	.	.	.	.	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	V	G	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.				T	T	T	S	S	S	S		T	T	T										T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.	.
Template SS confidence
									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		I	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	A	E	V	N	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	.	V	A	I	E	V	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	G	H	F	L	Q	R	F	A	E	R	N	R	K	A	V	K	G	F	T	P	Q	A	M	D	L
Query Conservation																																					.
Alig confidence																	.	.	.	.	.	.	.														.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	S	Q	G	V	L	V	L	G	A	T	N	I	P	.	.	.	.	.	.	.	W	Q	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	.	.	.	.	.	.	.	.	.	.	.	T	M	F	E	I	N	V	G	D	T	P	C	V	L	T	K	E	D	Y	R	T
Template Known Secondary structure		T	T	S		S								S			.	.	.	.	.	.	.	T	T	S																								.	.	.	.	.	.	.	.	.	.	.								T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.												.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	V	E	R	A	V	V	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	A	M	T	E	G	Y	S	G	S	D	I	A	V	V	V	K	D	A	L	M	Q	P
Template Known Secondary structure					T		T	T															T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions