Job Description P14375 Confidence 98.95% Date Thu Jan 5 11:33:59 GMT 2012 Rank 170 Aligned Residues 208 % Identity 20% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	E	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	I	H	A	S	S	A	R	S	E	K	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	D	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L
Query Conservation
Alig confidence																													.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	.	.	.	Q	A	N	F	I	S	I	K	G	.	.	.	.	.	.	.	.	.	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F
Template Known Secondary structure					S								T	T	S													T	.	.	.	T									.	.	.	.	.	.	.	.	.								T	T	T		T							T	T	T	T	T	T	T		S
Template Predicted Secondary structure																													.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.										.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.															.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Query Sequence		D	E	I	G	D	I	S	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	I	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	A	E	V	N	A	G	R	F	R	Q	D	L	Y	Y	.	.	R	L	N
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.										.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	.	.	.	.	.	.	.	D	I	I	D	P	A	I	L	R	P	G	R	L	D
Template Known Secondary structure		S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.	S		T	T	S	S								S		G	.	.	.	.	.	.	.	G	G			G	G	G	T	S	T	T	T	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610										.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.								.	.	.	630	.	.	.	.	.	.	.	.	.	640
			304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.									.
Predicted Secondary structure		.																																											.																												.	.	.	.	.	.	.	.
Query SS confidence		.																																											.																												.	.	.	.	.	.	.	.
Query Sequence		.	V	V	A	I	E	V	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	G	H	F	L	Q	R	F	A	E	R	N	R	K	A	V	K	G	F	T	P	Q	A	.	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	V	E	R	A	V	V	L	L	.	.	.	.	.	.	.	.	T
Query Conservation		.																																											.																												.	.	.	.	.	.	.	.
Alig confidence		.														.	.	.	.											.	.	.	.	.	.	.	.	.							.																												.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.											.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	.	.	.	.	A	I	L	K	A	N	L	R	K	S	.	.	.	.	.	.	.	.	.	P	V	A	K	D	V	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I
Template Known Secondary structure											T	T				.	.	.	.							T	T	T	S	.	.	.	.	.	.	.	.	.		B		S	S							T	T	T		S	S															T	T
Template Predicted Secondary structure																.	.	.	.											.	.	.	.	.	.	.	.	.
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.					.	.	.	.	.	660	.	.	.	.										.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	Y	I	S	E	R	E	L	P	L	A	I	A	S	T	P	I	P	L	G	Q	S	Q	D	I	Q	P	L	V	E	V	E	K	E	V
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		V	P	E	I	R	R	D	H	F	E	E	A	M	R	.	F	A	R	R	S	V	S	D	N	D	I	R	K	Y	E	M	F	A	Q	T	L
Template Known Secondary structure					B										T	.	T				S	S
Template Predicted Secondary structure																.
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.	.	740	.		.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions