Return to main results Retrieve Phyre Job Id

Job DescriptionP14375
Confidence94.21%DateThu Jan 5 11:33:59 GMT 2012
Rank262Aligned Residues65
% Identity18%Templatec2wjyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   146...150.........160.........170....... ..180.........190.........200.........210
Predicted Secondary structure 


















.














Query SS confidence 































.
































Query Sequence  PAMQHLLSEIALVAPSEATVLIHGDSGTGKEL. VARAIHASSARSEKPLVTLNCAALNESLLESEL
Query Conservation       
   
   
    



 

 



  . 
  

  
     


 
 
           
Alig confidence 































.
































Template Conservation    

 

  

  

   












 

  

  
      








 


 
  

Template Sequence  PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
Template Known Secondary structure 



TSS

TTS
TT
SS
SS
Template Predicted Secondary structure 





















Template SS confidence 

































































   469470.........480.........490.........500.........510.........520.........530....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions