Job Description P14375 Confidence 98.97% Date Thu Jan 5 11:33:59 GMT 2012 Rank 165 Aligned Residues 223 % Identity 20% Template c2r65A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex Resolution 3.30 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.											.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	P	A	V	T	A	S	Q	F	G	M	V	G	K	S	P	A	M	Q	H	L	L	S	E	I	A	L	V	.	.	.	.	.	.	.	.	.	.	A	P	S	E	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	I	H	A	S	S	A	R	S	E	K	P	L	V	T	L	N	C	A
Query Conservation																															.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																												.	.	.											.
Template Conservation																																																																				.	.	.											.
Template Sequence		N	A	E	K	P	N	V	R	F	K	D	M	A	G	N	E	E	A	K	E	E	V	V	E	I	V	D	F	L	K	Y	P	E	R	Y	A	N	L	G	A	K	I	P	K	G	V	L	L	V	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	G	E	.	.	.	A	H	V	P	F	F	S	M	G	G	.
Template Known Secondary structure										G	G	G	S		S							T	T									S						T	T	T					S							S	S	S	S	S												.	.	.		T								T	.
Template Predicted Secondary structure																																																																				.	.	.											.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.
Query SS confidence																																																.	.	.	.	.
Query Sequence		A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	D	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	.	.	.	.	.	S	P	M	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	I	I	S	V	D
Query Conservation																																																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																							.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	S	S	F	I	E	M	F	V	G	L	G	A	S	R	V	R	D	L	F	E	T	A	K	K	Q	A	P	S	I	I	F	I	D	E	I	D	A	I	G	K	N	D	E	R	E	Q	T	L	N	Q	L	L	A	E	M	D	G	F	G	.	.	.	.	.	.	.	.	S	E	N	A	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	G	G	S			S	S	S		S	T	T											T		S						T	T	G	G	G	T						S	T	T	T	S	S	S					T	T			S	.	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.	.
Template SS confidence
										237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.									.	.	.	.	300
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	L	I	A	A	T	H	R	D	L	A	A	E	V	N	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	V	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	G	H	F	L	Q	R	F	A	E	R	N	R	K	A	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W
Query Conservation
Alig confidence												.	.																.	.														.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation												.	.																.	.														.	.	.	.								.	.	.	.	.	.	.	.
Template Sequence		V	I	V	L	A	A	T	N	R	P	.	.	E	I	L	D	P	A	L	M	R	P	G	R	F	D	R	.	.	Q	V	L	V	D	K	P	D	F	N	G	R	V	.	.	.	.	E	I	L	K	V	H	I	.	.	.	.	.	.	.	.	K	G	V	K	L	A	N	D	V	N	L	Q	E	V	A	K	L	T	A
Template Known Secondary structure									S		T	.	.	T	S	S		G	G	G	G	S	T	T	S	S			.	.						S								.	.	.	.								.	.	.	.	.	.	.	.	T	T	S				S
Template Predicted Secondary structure												.	.																.	.														.	.	.	.								.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.					.	350	.	.	.	.	.									.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		P	G	N	I	R	E	L	E	N	A	V	E	R	A	V	V	L	L	.	.	.	T	G	E	Y	I	S	E	R	E	L	P	L	A	I	A	S
Query Conservation																				.	.	.
Alig confidence																				.	.	.
Template Conservation
Template Sequence		G	L	A	G	A	D	L	A	N	I	I	N	E	A	A	L	L	A	G	R	N	N	Q	K	E	V	R	Q	Q	H	L	K	E	A	V	E	R
Template Known Secondary structure		S			S																				S	S									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions