Job Description P14375 Confidence 99.45% Date Thu Jan 5 11:33:59 GMT 2012 Rank 139 Aligned Residues 231 % Identity 13% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		141	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		M	V	G	.	.	K	S	P	A	M	Q	H	L	L	S	E	I	A	L	V	A	P	S	E	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	I	H	A	S	S	A	R	S	E	K	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F
Query Conservation					.	.
Alig confidence					.	.																																																										.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	R	G	Y	R	V	I	Y	S	S	A	D	D	.	.	.	.	.	F	A	Q	A	M	V	E	H	L	K	K	G	T
Template Known Secondary structure					T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S															T	T											.	.	.	.	.												T
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.	.	.	.	.	.	.	160	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	A	D	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	M	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	I	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	A	E	V	N	A	G	R	F	R	Q	D	L
Query Conservation
Alig confidence								.	.	.	.	.																																						.	.	.	.	.	.	.	.															.	.	.
Template Conservation								.	.	.	.	.																																						.	.	.	.	.	.	.	.															.	.	.
Template Sequence		I	N	E	F	R	N	.	.	.	.	.	M	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	L	E	.	.	.	.	.	.	.	.	K	Q	I	I	L	A	S	D	R	H	P	Q	K	L	.	.	.	D	G	V	S	D	R	L
Template Known Secondary structure								.	.	.	.	.				T		S							G	G	G	G	T	T		S																T	T	.	.	.	.	.	.	.	.								S	S		G	G	G		.	.	.	T	T	S
Template Predicted Secondary structure								.	.	.	.	.																																						.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		164	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		Y	Y	R	L	N	V	V	A	I	E	V	.	.	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	G	H	F	L	Q	R	F	A	E	R	N	R	K	A	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	V	E	R	A	V	V	L	L	T	G	E	Y
Query Conservation													.	.
Alig confidence													.	.								.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	.	.	.	.	.	.	.	.	.	.	.	K	I	I	K	E	K	L	K	E	F	N	L	E	L	R	K	E	V	I	D	Y	L	L	E	N	.	.	T	K	N	V	R	E	I	E	G	K	I	K	L	I	K	L	K	G	F	E	G	L
Template Known Secondary structure								S									S					.	.	.	.	.	.	.	.	.	.	.										T	T															.	.			S												T	T	S		S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.												.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	E	R	E	L	P	L	A	I	A	S	T	P	I	P	L	G	Q	S	Q	D	I	Q	P	L	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	K	E	R	K	E	R	D	K	L	M	Q	I	V	E	F	V	A	N	Y	Y	A	V	K	V	E	D	I
Template Known Secondary structure			T						T	T	T	T						T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions