Job Description P14375 Confidence 98.95% Date Thu Jan 5 11:33:59 GMT 2012 Rank 169 Aligned Residues 204 % Identity 19% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.											.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	V	T	A	S	Q	F	G	M	V	G	K	S	P	A	M	Q	H	L	L	S	E	I	A	L	V	A	P	S	.	.	.	.	.	.	.	.	.	.	E	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	I	H	A	S	S	A	R	S	E	K	P	L	V	T	L	N	C	A	A	L
Query Conservation																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																																																			.	.
Template Sequence		E	R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L
Template Known Secondary structure								G	G	G	S		S																			G	G	G	S		T	T					S						S	S	S	S	S													T	.	.	T	S										S	S
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.												.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	D	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	.	.	.	.	.	.	.	.	.	.	.	S	P	M	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	I
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.
Template Sequence		V	S	.	.	.	.	.	.	.	.	.	K	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	.	.	.	.	.	.	.	.	V
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	S	S			S															T	S	S							T	T	T	G	G	G			S	S	S			T	T																S	S	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.
Template SS confidence
		205	.										.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.									.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	A	E	V	N	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	.	V	V	A	I	E	V	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	G	H	F	L	Q	R	F	A	E	R	N	R	K	A	V	K	G	F	T	P	Q	A	M	D	L	L
Query Conservation																																			.
Alig confidence																.	.	.	.	.	.	.													.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	D	G	I	L	V	L	G	A	T	N	I	P	.	.	.	.	.	.	.	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	.	.	.	.	.	.	.	.	.	.	.	A	M	F	K	L	H	L	G	T	T	Q	N	S	L	T	E	A	D	F	R	E	L
Template Known Secondary structure				T	T								S		T	.	.	.	.	.	.	.	T	T	S							T																	.	.	.	.	.	.	.	.	.	.	.								T	T			B
Template Predicted Secondary structure																.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.												.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	V	E	R	A	V	V	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	K	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure				T		T	T															T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions