Job Description P14375 Confidence 98.90% Date Thu Jan 5 11:33:59 GMT 2012 Rank 174 Aligned Residues 206 % Identity 15% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence		V	T	A	S	Q	F	G	M	V	G	K	S	P	A	M	Q	H	L	L	S	E	I	A	L	V	A	P	S	E	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	I	H	A	S	.	.	.	.	S	A	R	S	E	K	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E
Query Conservation																																																						.	.	.	.
Alig confidence																									.	.																												.	.	.	.
Template Conservation																									.	.
Template Sequence		R	P	K	N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	K	.	.	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K
Template Known Secondary structure				S	S	T	T	T			S			T	T								T	T	.	.		T	T									S	T	T	S	S																			T	T	S						S	S	S								T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	H	E	K	G	A	F	T	G	A	D	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	M	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	I	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	A	E	V
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	S	.	.	.	.	.	.	.	.	.	.	.	G	V	T	R	F	C	L	I	C	N	Y	V	.	.	.	.	.
Template Known Secondary structure								S							T	T					S				S							T	T	G	G	G	S															T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		G	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.												.	.	.	.	.	.	.	.	170	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	V	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	G	H	F	L	Q	R	F	A	E	R	N	R	K	A	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	V	E	R	A	V
Query Conservation
Alig confidence		.	.																					.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation		.	.																					.	.	.	.	.	.	.	.	.	.	.																																.
Template Sequence		.	.	T	R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	.	.	.	.	.	.	.	.	.	.	.	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	.	A	G	D	L	R	R	G	I	T	L	L	Q	S	A	S
Template Known Secondary structure		.	.	G	G	S								S										.	.	.	.	.	.	.	.	.	.	.														T	T	T															T	.	S	S												T
Template Predicted Secondary structure		.	.																					.	.	.	.	.	.	.	.	.	.	.																																.
Template SS confidence
				174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.												.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions