Job Description P23890 Confidence 87.31% Date Thu Jan 5 11:40:23 GMT 2012 Rank 141 Aligned Residues 196 % Identity 9% Template c3txmA_ PDB info PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.						330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		T	N	G	N	Q	L	A	I	Q	N	D	L	L	E	S	L	S	K	A	L	N	Q	P	W	P	Q	R	M	Q	E	T	L	Q	K	I	.	.	.	.	.	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L	H	G	D	D	K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S
Query Conservation																																					.	.	.	.	.
Alig confidence																																					.	.	.	.	.
Template Conservation
Template Sequence		N	D	E	E	R	I	R	I	K	E	Q	G	I	L	Q	Q	G	E	L	Y	K	Q	E	G	K	A	K	E	L	A	D	L	I	K	V	T	R	P	F	L	S	S	I	S	K	A	K	A	A	K	L	V	R	S	L	V	D	M	F	L	D	M	D	A	G	T	G	I	E	V	Q	L	C	K	D	C	I	E	W	A
Template Known Secondary structure							T																	T	T																	T	T	S																		T	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		P	E	F	.	.	.	.	.	.	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K	T	D	E	S	Y	Q	A	I	N	T	G
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																																									.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		K	Q	E	K	R	T	F	L	R	Q	S	L	E	A	R	L	I	A	L	Y	F	D	T	A	L	Y	T	E	A	L	A	L	G	A	Q	L	L	R	E	L	K	K	L	D	D	K	N	L	L	.	.	.	.	V	E	V	Q	L	L	E	S	K	T	Y	H	A	L	S	N	L	P	K	A	R	A	A	L	T	S	A
Template Known Secondary structure			T	T	T																				T																		T	S	S		T				.	.	.	.														T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		444	.	.					.	.	.					450	.	.	.	.	.	.	.	.	.	460	.	.		.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure					.	.	.	.				.	.	.	.														.
Query SS confidence					.	.	.	.				.	.	.	.														.
Query Sequence		I	D	L	.	.	.	.	E	M	S	.	.	.	.	W	L	N	Y	V	L	L	G	K	V	Y	E	M	.	K	G	M	N	R	E	A	A	D	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W	I	E	N	G	I	F
Query Conservation					.	.	.	.				.	.	.	.														.
Alig confidence					.	.	.	.				.	.	.	.														.
Template Conservation
Template Sequence		R	T	T	A	N	A	I	Y	C	P	P	K	V	Q	G	A	L	D	L	Q	S	G	I	L	H	A	A	D	E	R	D	F	K	T	A	F	S	Y	F	Y	E	A	F	E	G	F	D	S	V	D	S	V	K	A	L	T	S	L	K	Y
Template Known Secondary structure								S																					T	T																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions