Job Description P23890 Confidence 88.35% Date Thu Jan 5 11:40:23 GMT 2012 Rank 139 Aligned Residues 97 % Identity 9% Template c3mkqB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K
Query Conservation
Alig confidence															.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	N	L	D	A	A	L	D	E	A	K	K	L	.	.	.	.	.	N	D	S	I	T	W	E	R	L	I	Q	E	A	L	A	Q	G	N	A	S	L	A	E	M	I	Y	Q	T	Q	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	K	L	S	F	L	Y	L	V	T	G	D
Template Known Secondary structure		T													.	.	.	.	.																T	T												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T
Template Predicted Secondary structure															.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.	.						.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.																			.	.	.	.	.	.	710	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	S	W	L	N	Y	V	L	L	G	K	V	Y	E	M	K	G	M	N	R	E	A	A	D	A	Y	L	T	A
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		V	N	K	L	S	K	M	Q	N	I	A	Q	T	R	E	D	.	.	.	.	F	G	S	M	L	L	N	T	F	Y	N	N	S	T	K	E	R	S	S	I	F	A	E	G
Template Known Secondary structure															T	T		.	.	.	.												T												T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.					.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions