Job Description P23890 Confidence 92.23% Date Thu Jan 5 11:40:23 GMT 2012 Rank 137 Aligned Residues 136 % Identity 18% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K
Query Conservation
Alig confidence													.	.	.	.	.																																							.	.
Template Conservation													.	.	.	.	.																																							.	.
Template Sequence		G	Q	L	T	L	A	R	D	L	L	T	.	.	.	.	.	D	E	S	A	E	M	K	W	R	A	L	G	D	A	S	L	Q	R	F	N	F	K	L	A	I	E	A	F	T	N	A	H	D	L	E	S	L	F	.	.	L	L	H	S	S	F	N	N	K	E	G	L	V	T	L	A	K	D	A	E	T	T	G	K
Template Known Secondary structure		T										T	.	.	.	.	.	T																	T	T													T							.	.						T	T															T	T
Template Predicted Secondary structure													.	.	.	.	.																																							.	.
Template SS confidence
		666	.	.	.	670	.	.	.	.	.	.						.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.			.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	S	W	L	N	Y	V	L	L	G	K	V	Y	E	M	K	G	M	N	R	E	A	A	D	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	.	.	W	I	E	N	G	I	F	Q	T	S	V	P	Y	V	V
Query Conservation																																																									.	.
Alig confidence													.	.	.	.			.	.	.																																				.	.
Template Conservation													.	.	.	.			.	.	.
Template Sequence		F	N	L	A	F	N	A	Y	W	I	A	.	.	.	.	G	D	.	.	.	I	Q	G	A	K	D	L	L	I	K	S	Q	R	F	S	E	A	A	F	L	G	S	T	Y	G	L	G	D	N	E	V	N	D	I	V	T	K	W	K	E	N	L	I	L	N	G	K	N	T	V	S	E
Template Known Secondary structure													.	.	.	.	T		.	.	.											T	T												T	T																			T	T	T						T
Template Predicted Secondary structure													.	.	.	.			.	.	.
Template SS confidence
		739	740	.	.	.	.	.	.	.	.	.					750	.				.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions