Job Description P23890 Confidence 100.00% Date Thu Jan 5 11:40:23 GMT 2012 Rank 1 Aligned Residues 323 % Identity 100% Template c3ly8A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:transcriptional activator cadc; PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	R	I	L	L	N	P	R	D	I	D	I	N	M	V	N	K	S	C	N	S	W	S	S	P	Y	Q	L	S	Y	A	I	G	V	G	D	L	V	A	T	S	L	N	T	F	S	T	F	M	V	H	D	K	I	N	Y	N	I	D	E	P	S	S	S	G	K	T	L	S	I	A	F	V	N	Q	R	Q	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	R	I	L	L	N	P	R	D	I	D	I	N	M	V	N	K	S	C	N	S	W	S	S	P	Y	Q	L	S	Y	A	I	G	V	G	D	L	V	A	T	S	L	N	T	F	S	T	F	M	V	H	D	K	I	N	Y	N	I	D	E	P	S	S	S	G	K	T	L	S	I	A	F	V	N	Q	R	Q	Y	R
Template Known Secondary structure																			S	S	S	S	S	S			T	T																				S	S							T	T																						S	S	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	Q	C	F	M	S	I	K	L	V	D	N	A	D	G	S	T	M	L	D	K	R	Y	V	I	T	N	G	N	Q	L	A	I	Q	N	D	L	L	E	S	L	S	K	A	L	N	Q	P	W	P	Q	R	M	Q	E	T	L	Q	K	I	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	Q	C	F	M	S	I	K	L	V	D	N	A	D	G	S	T	M	L	D	K	R	Y	V	I	T	N	G	N	Q	L	A	I	Q	N	D	L	L	E	S	L	S	K	A	L	N	Q	P	W	P	Q	R	M	Q	E	T	L	Q	K	I	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L
Template Known Secondary structure		T												T	T	T													S	S	T																T	T															S		S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	D	D	K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	D	D	K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A	R	A	E	K	A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L
Template Known Secondary structure				S																			T	T																			S																			T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	G	K	T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	S	W	L	N	Y	V	L	L	G	K	V	Y	E	M	K	G	M	N	R	E	A	A	D	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W	I	E	N	G	I	F	Q	T	S	V	P	Y	V	V	P	Y	L	D	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	G	K	T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	S	W	L	N	Y	V	L	L	G	K	V	Y	E	M	K	G	M	N	R	E	A	A	E	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W	I	E	N	G	I	F	Q	T	S	V	P	Y	V	V	P	Y	L	D	K	F
Template Known Secondary structure				T																																T	T																S		S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		509	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		509	510	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions