 |
Job Description | P23890 | Confidence | 98.96% | Date | Thu Jan 5 11:40:23 GMT 2012 |
Rank | 93 | Aligned Residues | 100 |
% Identity | 12% | Template | c3k9iA_ |
PDB info |
PDB header:protein binding | Chain: A: PDB Molecule:bh0479 protein; |
PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution
|
Resolution | 2.71 Å |
|
 |
  |   |
398 | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | |
. | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | L | N | T | E | I | D | N | I | V | T | L | P | E | L | N | N | L | S | I | I | Y | Q | I | K | A | V | S | A | L | V | K | G | K | T | D | E | S | Y | Q | A | I | N | T | G | I | D | L | E | M | . |
S | W | L | N | Y | V | L | L | G | K | V | Y | E | M | K | G | M | N | R | E | A | A | D | A | Y | L | T | A |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   | . |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|
Template Sequence |   |
Q | A | V | P | Y | Y | E | K | A | I | A | S | G | L | Q | G | K | D | L | A | E | C | Y | L | G | L | G | S | T | F | R | T | L | G | E | Y | R | K | A | E | A | V | L | A | N | G | V | K | Q | F | P | N | H | Q | A | L | R | V | F | Y | A | X | V | L | Y | N | L | G | R | Y | E | Q | G | V | E | L | L | L | K | I |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
  |   |
477 | . | . | 480 | . | . | . | . | . | . | . | |
. | . | 490 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  | . |  |  |  |  |
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | N | L | R | P | G | A | N | T | L | Y | . |
W | I | E | N | G | I | F | Q | T | S |
Query Conservation |   |
|   |
|   |
|   |   |   |   |   |   | . |   |   |   |   |
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
Template Sequence |   |
I | A | E | T | S | D | D | E | T | I | Q | S | Y | K | Q | A | I | L | F | Y | A | D |
Template Known Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  | T |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|