Job Description P23890 Confidence 99.49% Date Thu Jan 5 11:40:23 GMT 2012 Rank 39 Aligned Residues 199 % Identity 9% Template c3fp4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:tpr repeat-containing protein yhr117w; PDBTitle: crystal structure of tom71 complexed with ssa1 c-terminal2 fragment Resolution 2.14 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	Q	N	D	L	L	E	S	L	S	K	A	L	N	Q	P	W	P	Q	R	M	Q	E	T	L	Q	K	I	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L	H	G	D	D	K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A	R	A	E	K
Query Conservation
Alig confidence																																																		.	.	.	.	.
Template Conservation																																																		.	.	.	.	.
Template Sequence		P	P	T	Y	Y	H	R	G	Q	M	Y	F	I	L	Q	D	Y	K	N	A	K	E	D	F	Q	K	A	Q	S	L	N	P	E	N	V	Y	P	Y	I	Q	L	A	C	L	L	Y	K	Q	.	.	.	.	.	G	K	F	T	E	S	E	A	F	F	N	E	T	K	L	K	F	P	T	L	P	E	V	P	T	F	F
Template Known Secondary structure															T	T																	T	T															T	.	.	.	.	.	T																	T	T		T
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.						460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																																						.
Query SS confidence																																		.																																						.
Query Sequence		A	L	V	D	I	V	R	H	S	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	.	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K	T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	.	S	W	L	N	Y	V	L	L	G
Query Conservation																																		.																																						.
Alig confidence																																		.																																						.
Template Conservation
Template Sequence		A	E	I	L	T	D	R	G	D	F	D	T	A	I	K	Q	Y	D	I	A	K	R	L	E	E	V	Q	E	K	I	H	V	G	I	G	P	L	I	G	K	A	T	I	L	A	R	Q	S	S	L	D	E	E	K	F	N	A	A	I	K	L	L	T	K	A	C	E	L	D	P	R	S	E	Q	A	K	I	G	L	A
Template Known Secondary structure								T	T																				S	S		S	S	T	T														T																						T	T
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	Y	E	M	K	G	M	N	R	E	A	A	D	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W	I	E	N	G	I	F	Q	T	S	V	P	Y	V	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	K	L	Q	M	E	K	I	D	E	A	I	E	L	F	E	D	S	A	I	L	A	R	T	M	D	E	K	L	Q	A	T	T	F	A	E	A	A	K	I	Q	K	R	L	R
Template Known Secondary structure							T	T																		S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions