 |
Job Description | P23890 | Confidence | 99.33% | Date | Thu Jan 5 11:40:23 GMT 2012 |
Rank | 54 | Aligned Residues | 99 |
% Identity | 24% | Template | c1p2fA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:response regulator; |
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
|
Resolution | 1.80 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | Q | P | V | V | R | V | G | E | W | L | V | T | P | S | I | N | Q | I | S | R | N | G | R | Q | L | T | L | E | P | R | L | I | D | L | L | V | F | F | A | Q | H | S | G | E | V | L | S | R | D | E | L | I | D | N | V | W | K | R | S | I | V | T | N | H | V | V | T | Q | S | I | S | E | L | R | K | S | L | K | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   | . |   |   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |
|
|   |   |
Template Sequence |   |
K | K | G | L | Y | D | F | G | D | L | K | I | D | A | T | G | F | T | V | F | L | K | G | K | R | I | H | L | P | K | K | E | F | E | I | L | L | F | L | A | E | N | A | G | K | V | V | T | R | E | K | L | L | E | T | F | W | E | D | . |
P | V | S | P | R | V | V | D | T | V | I | K | R | I | R | K | A | I | E | D |
Template Known Secondary structure |   |
|
| S |  |  |  |  | T | T |  |  |  |  | T | T | T | T |  |  |  |  | T | T |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |  |  |  |  |
| S | S | . |
|
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | |
. | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | D | E | D | S | P | V | Y | I | A | T | V | P | K | R | G | Y | K | L | M | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   | . |   |   |   |
|   |
|
|
|
|   |
|
|   |
|   |   |
Template Sequence |   |
D | P | N | R | . |
P | R | Y | I | K | T | I | W | G | V | G | Y | X | F | T | G |
Template Known Secondary structure |   |
S | T | T | S | . |
| S | S |  |  |  |  | T | T | T |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|
| . |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
198 | . | 200 | . | |
. | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|