Job Description P23890 Confidence 99.13% Date Thu Jan 5 11:40:23 GMT 2012 Rank 74 Aligned Residues 178 % Identity 8% Template c1ltxA_ PDB info PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

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		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.						.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		A	I	Q	N	D	L	L	E	S	L	S	K	A	L	N	Q	P	W	P	Q	R	M	Q	E	T	L	Q	K	I	L	P	H	R	G	A	L	L	T	N	F	Y	Q	A	H	D	Y	L	L	H	G	D	.	.	.	.	.	D	K	S	L	N	R	A	S	E	L	L	G	E	I	V	Q	S	S	P	E	F	T	Y	A
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	D	F	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F	L	E	S	C	L	R	V	N	P	K	S	Y	G	T
Template Known Secondary structure													S				S	S	T	T												T	T												G	G	G	S	S	S	S	S		T	T	T																				S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.
Predicted Secondary structure															.	.																																													.																	.
Query SS confidence															.	.																																													.																	.
Query Sequence		R	A	E	K	A	L	V	D	I	V	R	H	S	.	.	Q	H	P	L	D	E	K	Q	L	A	A	L	N	T	E	I	D	N	I	V	T	L	P	E	L	N	N	L	S	I	I	Y	Q	I	K	A	V	S	A	L	V	K	G	K	.	T	D	E	S	Y	Q	A	I	N	T	G	I	D	L	E	M	.	S	W	L
Query Conservation															.	.																																													.																	.
Alig confidence															.	.														.	.	.	.	.	.	.	.	.	.																						.																	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.
Template Sequence		W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	.	.	.	.	.	.	.	.	.	.	A	D	E	R	N	F	H	C	W	D	Y	R	R	F	V	A	A	Q	A	A	V	A	P	A	E	E	L	A	F	T	D	S	L	I	T	R	N	F	S	N	Y	S
Template Known Secondary structure													S	S		T														.	.	.	.	.	.	.	.	.	.			T	T															T	T																		S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.											.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.									.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		N	Y	V	L	L	G	K	V	Y	E	M	K	.	.	.	.	.	.	.	.	G	M	N	R	E	A	A	D	A	Y	L	T	A	F	N	L	R	P	G	A	N	T	L	Y	W
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	H	Y	R	S	C	L	L	P	Q	L	H	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	L	V	Q	N	A	F	F	T	D	P	N	D	Q	S	A	W	F
Template Known Secondary structure										T	T	T	T					S	S														T						T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions