 |
Job Description | P0A9E2 | Confidence | 38.22% | Date | Thu Jan 5 11:09:59 GMT 2012 |
Rank | 466 | Aligned Residues | 77 |
% Identity | 10% | Template | d1l8qa1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| TrpR-like
| Chromosomal replication initiation factor DnaA C-terminal domain IV
|
Resolution | 2.70 |
|
 |
  |   |
24 | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | D | V | V | A | K | K | S | G | Y | S | K | W | Y | L | Q | R | M | F | R | T | V | T | H | Q | T | L | G | D | Y | I | R | Q | R | R | L | L | L | A | A | V | E | L | R | T | T | E | R | P | I | F | D | I | A | M | D | L | G | Y | V | S | Q | Q | T | F | S | R | V | F | R | R | Q | F | D | R | T | P | S | D | Y |
Query Conservation |   |
|   |   |
|
|   |   |   |   |   |
|   |   |   |
|   |
|   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |
|   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |
|   |   |   | . | . | . | . | . | . | . |
|
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|
|   |   |   |
|   |   |   |
Template Sequence |   |
V | E | F | V | A | N | Y | Y | A | V | K | V | E | . |
. |
. |
. |
. |
. |
. |
D | I | L | S | D | K | R | N | K | R | T | S | E | A | R | K | I | A | X | Y | L | C | R | K | V | C | S | A | S | L | I | E | I | A | R | A | F | K | R | K | D | H | T | T | V | I | H | A | I | R | S | V | E | E | E | K | K | R | K | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | S |
|
|  |  | . | . | . | . | . | . | . |  |  | S | S |
|
|
|
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | S | S |
|
|
| S | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
309 | 310 | . | . | . | . | . | . | . | . | . | 320 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . |
  |
  |   |
104 | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
R | H | R | L |
Query Conservation |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
Template Conservation |   |
  |   |   |
|
Template Sequence |   |
K | H | L | V |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
384 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|