Job Description P0CE48 Confidence 100.00% Date Thu Jan 5 11:30:16 GMT 2012 Rank 10 Aligned Residues 375 % Identity 22% Template c3p27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: crystal structure of a translational gtpase (gdp form) Resolution 2.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	K	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C
Query Conservation
Alig confidence																																											.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		S	A	F	V	K	S	A	L	P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	X	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	.	.	.	.	.	L	R	K	L	Q	R	W	I	X	D	Q	T	V	T	V	S	I	C	T	S	H	F	S	T	H	R	A	N	F	T	I	V	D	A
Template Known Secondary structure								S												T	T	S	S												T	T	S	S		T	T		.	.	.	.	.																									S	S
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																															.																															.
Query SS confidence																															.																															.
Query Sequence		P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	.	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	.	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q
Query Conservation																															.																															.
Alig confidence					.	.	.	.																							.																															.
Template Conservation					.	.	.	.
Template Sequence		P	G	V	.	.	.	.	P	N	A	I	X	G	I	S	Q	A	D	X	A	I	L	C	V	D	C	S	T	F	D	L	D	G	Q	T	K	E	H	X	L	L	A	S	S	L	G	I	H	N	L	I	I	A	X	N	K	X	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D
Template Known Secondary structure					.	.	.	.											S																											T	T											G	G	G	G	T	T
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		253	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	.	.	.	.	.	.	.	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	.	.	.	.	.	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V
Query Conservation																									.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																	.	.	.	.	.																					.	.
Template Conservation																																																																									.	.
Template Sequence		I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	X	S	T	L	E	N	A	A	F	K	I	S	K	E	N	E	G	I	N	K	D	D	P	F	L	F	S	V	L	E	I	I	.	.	P	S	K	L	A	L	V
Template Known Secondary structure			T			G	G	G								T	T	T		B	T	T	S	S	B								T	T			S																		T	T	S			S	S	S											.	.
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		T	G	R	V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	.	.	.	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T	I	K	P	H	T	K	F
Query Conservation																																			.	.	.
Alig confidence																				.	.														.	.	.																																									.	.	.
Template Conservation																				.	.																																																									.	.	.
Template Sequence		S	G	K	L	E	S	G	S	I	Q	P	G	E	S	L	T	I	Y	.	.	P	S	E	Q	S	C	I	V	D	K	I	Q	V	G	S	Q	Q	H	E	E	T	D	V	A	I	K	G	D	F	V	T	L	K	L	R	K	A	Y	P	E	D	I	Q	N	G	D	L	A	A	S	V	D	Y	S	S	I	.	.	.	H
Template Known Secondary structure								S				T	T							.	.	T	T	T											T	T	T						S				T	T									S			G	G	G			T	T						T	T					.	.	.
Template Predicted Secondary structure																				.	.																																																									.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.				.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.													.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		E	S	E	V	Y	I	L	S	K	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	.	.	.	I	H	P	I	A	M	D
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		S	A	Q	C	F	V	L	E	L	T	T	F	D	X	N	R	P	L	L	P	G	T	P	F	I	L	F	I	G	V	K	E	Q	P	A	R	I	K	R	L	I	S	F	I	D	K	G	N	T	A	S	K	K	K	I	R	H	L	G	S	K	Q	R	A	F	V	E	I	E	L	I	E	V	K	R	W	I	P	L	L
Template Known Secondary structure				S												S	S		B		T	T								T	T																S	T	T				S	S			S		B		T	T											S		S	S
Template Predicted Secondary structure
Template SS confidence
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		371	.	.							.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		D	G	L	.	.	.	.	.	.	R	F	A	I	R	E	G	G	R	T	V	G	A	G	V	V	A	K	V	L
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	H	E	N	D	R	L	G	R	V	V	L	R	K	D	G	R	T	I	A	A	G	K	I	S	E	I	T
Template Known Secondary structure			T	T	T		T	T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610