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Job DescriptionP0CE48
Confidence100.00%DateThu Jan 5 11:30:16 GMT 2012
Rank2Aligned Residues368
% Identity96%Templatec3mmpC_
PDB info PDB header:transferaseChain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG
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Template Sequence  MSKQSKPHVNVGTIGHVDHGKTTLTAAITTV. . . . . . . . . . . . . . . . . . . LAKTYGGTSHVE. . . YDTPTRHYAHVDCPG
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   278.280.........290.........300........ .310.........320 .........330.....
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP
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Template Sequence  HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP
Template Known Secondary structure  TS


STTT


TTTT
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   1084.....1090.........1100.........1110.........1120.........1130.........1140.........1150.........1160...
 
   165....170.........180.........190.........200.........210.........220.........230.........240....
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Query Sequence  GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE
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Template Sequence  GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE
Template Known Secondary structure  GGG



T
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GGGS



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   1164.....1170.........1180.........1190.........1200.........1210.........1220.........1230.........1240...
 
   245....250.........260.........270.........280.........290.........300.........310.........320....
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Query Sequence  IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFF
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Template Sequence  IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFF
Template Known Secondary structure  SSS


SS
STT
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GGG

TT

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   1244.....1250.........1260.........1270.........1280.........1290.........1300.........1310.........1320...
 
   325....330.........340.........350.........360.........370.........380.........390....
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Query Sequence  KGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS
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Template Sequence  KGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS
Template Known Secondary structure  TT


TT

TT


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   1324.....1330.........1340.........1350.........1360.........1370.........1380.........1390...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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