Job Description P0CE48 Confidence 100.00% Date Thu Jan 5 11:30:16 GMT 2012 Rank 12 Aligned Residues 343 % Identity 27% Template c3mcaA_ PDB info PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		3	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		K	E	K	F	E	R	T	.	.	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V
Query Conservation									.	.
Alig confidence									.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	I	F	E	Q	S	N	P	K	P	V	V	H	L	V	V	T	G	H	V	D	S	G	K	S	T	M	L	G	R	I	M	F	E	L	G	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G
Template Known Secondary structure				G	G	G	G	S														S	S	S	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																																								.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	.	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S
Query Conservation																																																															.
Alig confidence																																																															.
Template Conservation
Template Sequence		D	A	P	G	H	R	D	F	I	S	G	M	I	A	A	V	L	V	V	D	S	S	Q	N	N	F	E	R	G	F	L	E	N	G	Q	T	R	E	H	A	Y	L	L	R	A	L	G	I	S	E	I	V	V	S	V	N	K	L	D	L	M	S	W	S	E	D	R	F	Q	E	I	K	N	I	V	S	D	F	L	I
Template Known Secondary structure					S	S	S											S									S	S	T	T	S		S		S	S											S	S											G	G	G	G	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure			.																									.	.	.	.	.	.
Query SS confidence			.																									.	.	.	.	.	.
Query Sequence		Q	.	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	.	.	.	.	.	.	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V	T	G	R	V
Query Conservation			.																									.	.	.	.	.	.
Alig confidence			.																									.	.	.	.	.	.															.																									.
Template Conservation																																																.																									.
Template Sequence		K	M	V	G	F	K	T	S	N	V	H	F	V	P	I	S	A	I	S	G	T	N	L	I	Q	K	D	S	S	D	L	Y	K	W	Y	K	G	P	T	L	L	S	A	L	D	Q	.	L	V	P	P	E	K	P	Y	R	K	P	L	R	L	S	I	D	D	V	Y	R	S	P	R	.	S	V	T	V	T	G	R	V
Template Known Secondary structure		T	T	S				G	G	G								S	S	S		S	S	S		S					G	G	G	G	T			S									T	.	S				S		T	T	T	S													T	T	.
Template Predicted Secondary structure																																																.																									.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																.																																					.
Query SS confidence																																.																																					.
Query Sequence		E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	.	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T	.	I	K	P	H	T	K	F	E	S	E	V	Y
Query Conservation																																.																																					.
Alig confidence																.	.															.																																					.
Template Conservation																.	.
Template Sequence		E	A	G	N	V	Q	V	N	Q	V	L	Y	D	V	.	.	S	S	Q	E	D	A	Y	V	K	N	V	I	R	N	S	D	P	S	S	T	W	A	V	A	G	D	T	V	T	L	Q	L	A	D	I	E	V	N	Q	L	R	P	G	D	I	L	S	N	Y	E	N	P	V	R	R	V	R	S	F	V	A	E	I	Q
Template Known Secondary structure				S				T	T						T	.	.	T	T	T											S	S	S		S						T	T								S	S	S		G	G	G			T	T						S	S	S						S
Template Predicted Secondary structure																.	.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.							.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																						.								.	.	.	.	.	.
Query SS confidence																																					.	.	.	.																						.								.	.	.	.	.	.
Query Sequence		I	L	S	K	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	.	.	.	.	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	I	H	P	.	I	A	M	D	D	G	L	.	.	.	.	.	.	R	F	A	I	R	E
Query Conservation																																					.	.	.	.																						.								.	.	.	.	.	.
Alig confidence					.	.	.	.	.																												.	.	.	.																						.								.	.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		T	F	D	.	.	.	.	.	I	H	G	P	I	L	S	G	S	T	L	V	L	H	L	G	R	T	V	T	S	V	S	L	K	I	V	T	V	N	N	K	R	S	R	H	I	A	S	R	K	R	A	L	V	R	I	S	F	L	D	G	L	F	P	L	C	L	A	E	E	C	P	A	L	G	R	F	I	L	R	R
Template Known Secondary structure				S	.	.	.	.	.		S	S				T	T								S	S												S	S	S	S			S				S	S										S	S	S							T	T	T											S
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		504	.	.						.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	R	T	V	G	A	G	V	V	A	K	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	D	T	V	A	A	G	I	V	K	E	L	C
Template Known Secondary structure		S	S	S
Template Predicted Secondary structure
Template SS confidence
		579	580	.	.	.	.	.	.	.	.	.	590	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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