Job Description P0CE48 Confidence 100.00% Date Thu Jan 5 11:30:16 GMT 2012 Rank 27 Aligned Residues 237 % Identity 29% Template c3izyP_ PDB info PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 Resolution 10.80 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	.	P	T	R	H	Y	A	H	V	D	C	P	G	H	A	D
Query Conservation																																																																		.
Alig confidence							.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation							.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	S	P	V	.	V	T	I	M	G	H	V	D	H	G	K	T	T	L	L	D	K	L	R	K	T	Q	V	A	A	M	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	Q	H	I	G	A	F	L	V	S	L	P	S	G	E	K	I	T	F	L	D	T	P	G	H	A	A
Template Known Secondary structure						B	.						S	T	T	T	T																S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B				T	T	S			B		S	S		S	S			B					S	S	S
Template Predicted Secondary structure							.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D
Query Conservation
Alig confidence																																											.														.	.
Template Conservation																																											.														.	.
Template Sequence		F	S	A	M	R	A	R	G	T	Q	V	T	D	I	V	I	L	V	V	A	A	D	D	G	V	M	K	Q	T	V	E	S	I	Q	H	A	K	D	A	H	V	.	P	I	V	L	A	I	N	K	C	D	K	A	E	.	.	A	D	P	E	K	V	K	K	E	L	L	A	Y	D	V	V	C	E	D	Y	G	G	D
Template Known Secondary structure		T	T	T	S	B	B	S	S	S	B	S	B	S	S						B	S	S	S															T	T	T		.							B	S	G	G	G	T	T	.	.	T	S			S	S	S	S					T	T	S					S	S	S	S
Template Predicted Secondary structure																																											.														.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	.	.	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	I	K	V	G	E	E	V	E	I
Query Conservation																																				.	.
Alig confidence																		.	.	.	.	.	.	.	.											.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		V	Q	A	V	H	V	S	A	L	T	G	E	N	M	M	A	.	.	.	.	.	.	.	.	L	A	E	A	T	I	A	L	A	E	M	L	E	L	K	A	D	P	T	G	A	V	E	G	T	V	I	E	S	F	T	D	K	G	R	G	P	V	T	T	A	I	I	Q	R	G	T	L	R	K	G	S	I	L	V	A
Template Known Secondary structure									S	S	S	S		S	S			.	.	.	.	.	.	.	.										T	T							S	S	S	S												T	T															S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	.	K	L	L	D	E	G	R	A	G	E	N	V	G	V
Query Conservation																				.
Alig confidence						.	.	.	.											.
Template Conservation						.	.	.	.
Template Sequence		G	K	S	W	.	.	.	.	A	K	V	R	L	M	F	D	E	N	G	R	A	V	N	E	A	Y	P	S	M	P	V	G	I
Template Known Secondary structure		S	S			.	.	.	.														S			S			S	T	T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		390	.	.	.					.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions