Job Description P0CE48 Confidence 100.00% Date Thu Jan 5 11:30:16 GMT 2012 Rank 7 Aligned Residues 385 % Identity 25% Template c3izq1_ PDB info PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Resolution 9.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	E	K	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	T	P	V	K	S	A	L	P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	M	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	E	S	E	T	M	G	K	S	S	F	K	F	A	W	I	M	D	Q	T	N	E	E	R	E	R	G	V	T	V	S	I	C
Template Known Secondary structure		S	S																		S	S	S											S		S	S		S												S	S		S	S	S	S			S	S	S												T	T	T			S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	.	.	.	.	.	.	.	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	H	F	S	T	H	R	A	N	F	T	I	V	D	A	P	G	H	R	D	F	V	P	N	A	I	M	G	I	S	Q	A	D	M	A	I	L	C	V	D	C	S	T	N	A	F	E	S	G	F	D	L	D	G	Q	T	K	E	H	M	L	L	A	S	S	L	G	I	H	N	L	I	I	A	M	N	K	M	D
Template Known Secondary structure								S	S										S	S	S							T	T	T	S	S			S									S						T	T			T	T	S											T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.
Predicted Secondary structure				.																																											.	.	.	.	.	.	.																		.	.	.	.	.
Query SS confidence				.																																											.	.	.	.	.	.	.																		.	.	.	.	.
Query Sequence		M	V	.	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	.	.	.	.	.	.	.	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	.	.	.	.	.	P	E	P	E	R	A
Query Conservation				.																																											.	.	.	.	.	.	.																		.	.	.	.	.
Alig confidence				.																																											.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D	I	G	F	F	E	D	N	I	N	W	V	P	I	S	G	F	S	G	E	G	V	Y	K	I	E	Y	T	D	E	V	R	Q	W	Y	N	G	P	N	L	M	S	T	L	E	N	A	A	F	K	I	S	K	E	N	E	G	I	N
Template Known Secondary structure		T	T	T	T																				T			G	G	G								T	T	T		T	T	T	S	S		T	T	S		T	T			S			S								T	T	S							S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																.	.	.																																										.	.	.	.	.	.	.	.
Query SS confidence																.	.	.																																										.	.	.	.	.	.	.	.
Query Sequence		I	D	K	P	F	L	L	P	I	E	D	V	F	S	.	.	.	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	.	.	.	.	.	.	.	.	F	R	K	L	L	D	E	G	R	A	G	E	N	V
Query Conservation																.	.	.																																										.	.	.	.	.	.	.	.
Alig confidence																.	.	.																											.	.														.	.	.	.	.	.	.	.
Template Conservation																																													.	.
Template Sequence		K	D	D	P	F	L	F	S	V	L	E	I	I	P	S	K	K	T	S	N	D	L	A	L	V	S	G	K	L	E	S	G	S	I	Q	P	G	E	S	L	T	I	Y	.	.	P	S	E	Q	S	C	I	V	D	K	I	Q	V	G	S	Q	Q	G	Q	S	T	N	H	E	E	T	D	V	A	I	K	G	D	F	V
Template Known Secondary structure				S													S	S	S		S	S	S	S									S				T	T						T	.	.	T	T	T											S	S			S		S	S	S									T	T
Template Predicted Secondary structure																																													.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																									.	.																																																.	.	.	.	.	.	.	.
Query SS confidence																									.	.																																																.	.	.	.	.	.	.	.
Query Sequence		G	V	L	L	R	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T	.	.	I	K	P	H	T	K	F	E	S	E	V	Y	I	L	S	K	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	.	.	.	.	.	.	.	.
Query Conservation																									.	.																																																.	.	.	.	.	.	.	.
Alig confidence																									.	.																.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.
Template Sequence		T	L	K	L	R	K	A	Y	P	E	D	I	Q	N	G	D	L	A	A	S	V	D	Y	S	S	I	H	S	A	Q	C	F	V	L	E	L	T	T	F	D	.	.	.	.	.	M	N	R	P	L	L	P	G	T	P	F	I	L	F	I	G	V	K	E	Q	P	A	R	I	K	R	L	I	S	F	I	D	K	G	N
Template Known Secondary structure						S	S			T	T	S			T	T				B		S	T	T		S				B	S										S	.	.	.	.	.		S	S		B		T	T							S	S	S													S	S	S	S
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.						.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
						346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.							.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.																			.	.	.											.	.	.	.	.	.
Query SS confidence		.	.	.	.																			.	.	.											.	.	.	.	.	.
Query Sequence		.	.	.	.	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	.	.	.	I	H	P	I	A	M	D	D	G	L	.	.	.	.	.	.	R	F	A	I	R	E	G	G	R	T	V	G	A	G	V	V	A	K	V	L
Query Conservation		.	.	.	.																			.	.	.											.	.	.	.	.	.
Alig confidence		.	.	.	.																			.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	S	K	K	K	I	R	H	L	G	S	K	Q	R	A	F	V	E	I	E	L	I	E	V	K	R	W	I	P	L	L	T	A	H	E	N	D	R	L	G	R	V	V	L	R	K	D	G	R	T	I	A	A	G	K	I	S	E	I	T
Template Known Secondary structure			B		T	T		S		S	S	S	S			S								S	S		S	S		B					T	T	T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610