Job Description P0CE48 Confidence 98.17% Date Thu Jan 5 11:30:16 GMT 2012 Rank 299 Aligned Residues 176 % Identity 20% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		E	K	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	.	.	.	.	.	.	.	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.																			.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A
Template Known Secondary structure						T	S		S										T	T	S	S															T	T										T	T															T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
										72	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.	.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N
Query Conservation		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.													.															.																					.	.
Template Conservation																																										.															.																					.	.
Template Sequence		Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	.	K	P	N	L	V	I	F	V	G	D	A	L	A	G	.	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	.	.	L	T
Template Known Secondary structure												T		S								S	S			S	S	S														.			S								T	T		T	.	T	T												S							.	.
Template Predicted Secondary structure																																										.															.																					.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		K	L	D	A	D	A	R	G	G	A	A	L	S	I	S	Y	V	I	D	.	.	.	.	.	.	.	.	.	.	.	.	A	P	I	L	F	V	G	.	.	V	G	Q	G	Y	D	D	L	R	P	F	E	K	E	W	F	L	E	R	I	F
Template Known Secondary structure		S	G	G	G		S	S												T	.	.	.	.	.	.	.	.	.	.	.	.								.	.		S	S	S	G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.													290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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