Job Description P0CE48 Confidence 100.00% Date Thu Jan 5 11:30:16 GMT 2012 Rank 20 Aligned Residues 256 % Identity 26% Template c2ywfA_ PDB info PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus Resolution 2.24 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	.	.	.	.	.	D	T	P	T	R	H	Y	A	H	V	D	C
Query Conservation																																																																	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	K	N	V	R	N	F	C	I	I	A	H	V	D	H	G	K	S	T	L	A	D	R	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	G	A	I	G	I	T	V	K	M	Q	A	V	R	M	F	Y	K	A	K	D	G	N	T	Y	K	L	H	L	I	D	T
Template Known Secondary structure			G	G	G										T	T	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T								S		S								T	T	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D
Query Conservation
Alig confidence																																																.														.	.														.	.	.	.	.
Template Conservation																																																.														.	.														.	.	.	.	.
Template Sequence		P	G	H	V	D	F	S	Y	E	V	S	R	A	L	A	A	C	E	G	A	L	L	L	I	D	A	S	Q	G	I	E	A	Q	T	V	A	N	F	W	K	A	V	E	Q	D	L	.	V	I	I	P	V	I	N	K	I	D	L	P	S	.	.	A	D	V	D	R	V	K	K	Q	I	E	E	V	.	.	.	.	.
Template Known Secondary structure				S	G	G	G										T		S								T	T	T		S														T	T		.									T	T	S	T	T	.	.														.	.	.	.	.
Template Predicted Secondary structure																																																.														.	.														.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	I	K	V	G	E	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence		L	G	L	D	P	E	E	A	I	L	A	S	A	K	E	G	I	G	I	E	E	.	.	.	.	.	.	.	.	I	L	E	A	I	V	N	R	I	P	P	P	K	G	D	P	Q	K	P	L	K	A	L	I	F	D	S	Y	Y	D	P	Y	R	G	A	V	A	F	V	R	I	F	D	G	E	V	K	P	G	D	K
Template Known Secondary structure		T				G	G	G					B	T	T	T	T	B	S				.	.	.	.	.	.	.	.									S							T	T	S													T	T	T											S				T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	.	.	.	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T	I	K	P
Query Conservation																						.	.	.
Alig confidence						.	.															.	.	.
Template Conservation						.	.
Template Sequence		I	M	L	M	.	.	S	T	G	K	E	Y	E	V	T	E	V	G	A	Q	T	P	K	M	T	K	F	D	K	L	S	A	G	D	V	G	Y	I	A	A	S	I	K	D	V	R	D	I	R	I	G	D	T	I	T	H	A	K	N	P	T	K
Template Known Secondary structure					T	.	.	T	T	T												S	S	S					S				T	T							S					G	G	G	S		T	T						S	S	S			S
Template Predicted Secondary structure						.	.
Template SS confidence
		225	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions