Job Description P0CE48 Confidence 100.00% Date Thu Jan 5 11:30:16 GMT 2012 Rank 17 Aligned Residues 370 % Identity 25% Template c2plfA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.												.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.																															.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.																															.	.
Query Sequence		R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	.	.	.	.	.	.	.	.	.	.	.	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	.	.
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.																															.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		K	V	Q	P	E	V	N	I	G	V	V	G	H	V	D	H	G	K	T	T	L	V	Q	A	I	T	G	I	W	T	S	K	H	S	E	E	L	K	R	G	M	T	I	K	L	G	Y	A	E	T	N	I	G	V	C	E	S	C	K	K	P	E	A	Y	V	T	E	P	S	C	K	S	C	G	S	D	D	E	P	K
Template Known Secondary structure														S	S	T	T	S	S	S	T	T						S	S		S	T	T		T	T	T	T	T	T				S	S												T	T	S		T	T	T	T			S	S	S			G	G	G	T			S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
				75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.																																							.
Query SS confidence		.	.																																							.
Query Sequence		.	.	R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	.	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E
Query Conservation		.	.																																							.
Alig confidence		.	.																																							.																																.
Template Conservation																																																																										.
Template Sequence		F	L	R	R	I	S	F	I	D	A	P	G	H	E	V	L	M	A	T	M	L	S	G	A	A	L	M	D	G	A	I	L	V	V	A	A	N	E	P	F	P	Q	P	Q	T	R	E	H	F	V	A	L	G	I	I	G	V	K	N	L	I	I	V	Q	N	K	V	D	V	V	S	K	.	E	E	A	L	S	Q	Y
Template Known Secondary structure													S	S				S	S	S					T	T	S		S								T	T	S		S	S														T	T			S								G	G	G	S			.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V	T	G	R
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		R	Q	I	K	Q	F	T	K	G	T	W	A	.	.	E	N	V	P	I	I	P	V	S	A	L	H	K	I	N	I	D	S	L	I	E	G	I	E	E	Y	I	K	T	P	Y	R	D	L	S	Q	K	P	V	M	L	V	I	R	S	F	D	V	N	K	P	G	T	Q	F	N	E	L	K	G	G	V	I	G	G	S
Template Known Secondary structure						T	T	S	T	T	S	G	G	.	.	G	G							B	T	T	T	T	B	S												S							T	T	S															T	T			G	G	G
Template Predicted Secondary structure														.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.											250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																																.	.	.
Query Sequence		V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	.	.	.	.	.	.	.	.	.	.	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	.	.	.	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T
Query Conservation																				.	.	.	.	.	.	.	.	.	.																																.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation
Template Sequence		I	I	Q	G	L	F	K	V	D	Q	E	I	K	V	L	P	G	L	R	V	E	K	Q	G	K	V	S	Y	E	P	I	F	T	K	I	S	S	I	R	F	G	D	E	E	F	K	E	A	K	P	G	G	L	V	A	I	G	T	Y	L	D	P	S	L	T	K	A	D	N	L	L	G	S	I	I	T	L	A	D	A
Template Known Secondary structure					S				T	T													G	G	G	S																T	T				S				T	T	S							S	S		G	G	G	T	T	T	T	T	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		299	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure					.																				.	.	.	.
Query SS confidence					.																				.	.	.	.
Query Sequence		I	K	P	.	H	T	K	F	E	S	E	V	Y	I	L	S	K	D	E	G	G	R	H	.	.	.	.	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	I	H	P	I	A	M	D	D	G	L
Query Conservation					.																				.	.	.	.
Alig confidence					.																				.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.
Template Sequence		E	V	P	V	L	W	N	I	R	I	K	Y	N	L	L	E	R	V	V	G	A	K	E	M	L	K	V	D	P	I	R	A	K	E	T	L	M	L	S	V	G	S	S	T	T	L	G	I	V	T	S	V	K	K	D	.	.	.	.	.	.	.	.	.	E	I	E	V	E	L	R	R	P	V	A	V	W	S	N	N
Template Known Secondary structure																	S					T	T	T									T	T								T	T												S	S	.	.	.	.	.	.	.	.	.														S	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.										.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
								374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	F	A	I	R	E	G	G	R	T	V	G	A	G	V	V	A
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.			.
Template Conservation										.
Template Sequence		I	R	T	V	I	S	R	Q	.	I	A	G	R	W	R	M	I	G	W	G	L	V	E
Template Known Secondary structure										.	S	T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		393	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions