Job Description P0CE48 Confidence 98.73% Date Thu Jan 5 11:30:16 GMT 2012 Rank 256 Aligned Residues 149 % Identity 15% Template c1z06A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein rab-33b; PDBTitle: gppnhp-bound rab33 gtpase Resolution 1.81 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	.	.	.	D	C	P	G	H	A	D
Query Conservation																																																																								.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	F	K	I	I	V	I	G	D	S	N	V	G	K	T	C	L	T	Y	R	F	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	R	F	P	D	R	T	E	A	T	I	G	V	D	F	R	E	R	A	V	D	I	D	G	E	R	I	K	I	Q	L	W	D	T	A	G	Q	E	R	F
Template Known Secondary structure												T	T	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S			S	S						S											T	T													S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	.	.	.	.	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		R	K	S	M	V	Q	H	Y	Y	R	N	V	H	A	V	V	F	V	Y	D	M	T	N	M	A	S	F	H	S	L	P	A	W	I	E	E	C	K	Q	H	L	L	A	N	D	I	P	R	I	L	V	G	N	K	C	D	L	R	S	A	I	Q	V	P	T	D	L	A	Q	K	F	A	D	T	H	.	.	.	.	.
Template Known Secondary structure			T	T	T						T	T										T	T							T															S											T	T		G	G	G			S												T	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	M	P	L	F	E	T	S	A	K	N	P	N	D	N	D	H
Template Known Secondary structure		.	.	.	T								S	S	S	G	G	G	G	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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