Job Description P0CE48 Confidence 97.70% Date Thu Jan 5 11:30:16 GMT 2012 Rank 325 Aligned Residues 128 % Identity 20% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																														.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	.	.	.	.	.	.	.	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D
Template Known Secondary structure		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
					72	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.														.	.	.	.	.	.									.	.
Query SS confidence		.	.	.														.	.	.	.	.	.									.	.
Query Sequence		.	.	.	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	.	.	H	A	D	Y	V	K	N	M	.	.	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D
Query Conservation		.	.	.														.	.	.	.	.	.									.	.
Alig confidence		.	.	.														.	.	.	.	.	.									.	.																					.																				.	.
Template Conservation																																																						.																				.	.
Template Sequence		I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	.	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	.	.	I	T	K	M	D
Template Known Secondary structure						T	T		S									S			S	S	T																		S								T	T	T	G	G	.	G	G									T	T		S	S					.	.				S	S
Template Predicted Secondary structure																																																						.																				.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions