Job Description P25519 Confidence 99.62% Date Thu Jan 5 11:41:54 GMT 2012 Rank 135 Aligned Residues 195 % Identity 16% Template c3dpuA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab family protein; PDBTitle: roccor domain tandem of rab family protein (roco) Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	Q	I	Q	S	R	L	E	R	V	E	K	Q	R	E	Q	G	R	Q	S	R	I	K	A	D	V	P	T	V	S	L	V	G	Y	T	N	A	G	K	S	T	L	F	N	R	I	T	E	A	R	V	Y	A	A	D	Q	L	F	A	T	L	D	P	T	L	R	R	I	D	V	A	D	V	G	E	T	V	L	A
Query Conservation
Alig confidence																													.																																										.	.
Template Conservation																													.																																										.	.
Template Sequence		K	E	A	V	R	Q	Y	F	Q	S	I	E	E	A	R	S	K	G	E	A	L	V	H	L	Q	E	I	.	K	V	H	L	I	G	D	G	M	A	G	K	T	S	L	L	K	Q	L	I	G	G	L	N	V	V	T	K	Q	A	P	N	I	K	G	L	E	N	D	D	E	.	.	L	K	E	C	L	F	H	F	W
Template Known Secondary structure																		T	T				B						.						S	S	S		S	S																			G	G	G	S	G	G	G	T	T		S	T	.	.	T	T	T
Template Predicted Secondary structure																													.																																										.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.			.	.	.	.	.	500	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	V	G	F	I	R	H	L	P	H	D	L	V	A	A	F	K	A	T	L	Q	E	T	R	Q	A	T	L	L	L	H	V	I	D	A	A	D	V	R	V	Q	E	N	I	E	A	V	N	T	V	L	E	E	I	D	A	H	E	I	P	T	L	L	V	M	N	K	I	D	M	L	E	D	F	E	P	R	I	D
Query Conservation
Alig confidence						.	.												.	.	.	.	.	.																.	.	.															.
Template Conservation						.	.												.	.	.	.	.	.																.	.	.															.
Template Sequence		D	F	G	G	.	.	Q	E	I	M	H	A	S	H	Q	F	F	.	.	.	.	.	.	M	T	R	S	S	V	Y	M	L	L	L	D	S	R	T	.	.	.	D	S	N	K	H	Y	W	L	R	H	I	E	K	Y	.	G	G	K	S	P	V	I	V	V	M	N	K	I	D	E	N	P	S	Y	N	I	E	Q	K
Template Known Secondary structure					S	.	.			T	T	T	T	T					.	.	.	.	.	.			S	S									G	G	G	.	.	.	G	G	G												.	S	S	S										T	T	T		T	T
Template Predicted Secondary structure						.	.												.	.	.	.	.	.																.	.	.															.
Template SS confidence
		515	.	.	.			.	520	.	.	.	.	.	.	.	.	.							530	.	.	.	.	.	.	.	.	.	540	.	.	.	.				.	.	.	.	.	550	.	.	.	.	.	.	.	.		.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
		331	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		R	D	E	E	N	K	P	.	.	.	.	N	R	V	W	L	S	A	Q	T	G	A	G	I	P	Q	L	F	Q	A	L	T	E	R	L	S	G	E	V	A	Q	H	T	L	R	L	P	P	Q	E	G	R	L	R	S	R	F	Y	Q
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.											.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		K	I	N	E	R	F	P	A	I	E	N	R	F	H	R	I	S	C	V	E	S	.	.	.	.	.	I	A	K	S	L	K	S	A	V	L	H	P	D	S	I	Y	G	T	P	L	A	P	S	W	I	K	V	K	E	K	L	V	E
Template Known Secondary structure								G	G	G	T	T									T	T	.	.	.	.	.										T		T	T	S	G	G	G			B
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.						.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions