Job Description P25519 Confidence 98.84% Date Thu Jan 5 11:41:54 GMT 2012 Rank 263 Aligned Residues 152 % Identity 26% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.		.	.	.	.	.	.	.	230													.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																													.	.	.	.	.	.					.									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.					.									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	K	A	D	V	P	T	V	S	L	V	G	Y	T	N	A	G	K	S	T	L	F	N	R	I	T	.	.	.	.	.	.	E	A	R	V	.	Y	A	A	D	Q	L	F	A	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	P	T	L	R	R	I	D	V	A	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.					.									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.					.									.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A
Template Known Secondary structure			T	S		S										T	T	S	S															T	T										T	T															T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
								243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	V	G	E	T	V	L	A	D	T	V	G	F	I	R	H	L	P	H	D	L	V	A	A	F	K	A	T	L	Q	E	T	R	Q	A	T	L	L	L	H	V	I	D	A	A	D	V	R	V	Q	E	N	I	E	A	V	N	T	V	L	E	E	I	D	A	H	E	I	P	T	L	L	V	M
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.													.																				.															.	.																		.	.	.	.
Template Conservation																				.																				.															.	.																		.	.	.	.
Template Sequence		I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	.	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	.	K	P	N	L	V	I	F	V	G	D	A	L	A	G	.	.	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	.	.	.	.	G	I	I	L
Template Known Secondary structure									T		S								S	.	S			S	S	S														.			S								T	T		T	.	.	T	T												S				.	.	.	.
Template Predicted Secondary structure																				.																				.															.	.																		.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	I	D	M	L	E	D	F	E	P	R	I	D	R	D	E	E	N	K	P	N	R	V	W	L	S	A	Q	T	G	A	G	I	P	Q	L
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		T	K	L	D	A	D	A	R	G	G	A	A	L	S	I	S	Y	V	I	D	A	P	I	L	F	V	G	.	.	V	G	Q	G	Y	D	D	L
Template Known Secondary structure			S	G	G	G		S	S												T								.	.		S	S	S	G	G	G
Template Predicted Secondary structure																													.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions